Variant report

Variant	rs34531312
Chromosome Location	chr14:69810752-69810753
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:69808591..69811253-chr14:69813136..69815763,3	MCF-7	breast:
2	chr14:69805502..69808106-chr14:69810708..69812563,2	MCF-7	breast:
3	chr14:69810682..69812571-chr14:69823617..69825729,2	MCF-7	breast:
4	chr14:69810681..69813205-chr14:69822055..69824419,2	K562	blood:
5	chr14:69808456..69811857-chr14:69822855..69826097,4	MCF-7	breast:
6	chr14:69725598..69728352-chr14:69809283..69810868,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000100626	Chromatin interaction
ENSG00000258520	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs1026385	1.00[AFR][1000 genomes]
rs12879905	1.00[AFR][1000 genomes]
rs12893308	1.00[AFR][1000 genomes]
rs35593122	1.00[AFR][1000 genomes]
rs45557240	1.00[AFR][1000 genomes]
rs59831177	1.00[AFR][1000 genomes]
rs71423360	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv456334	chr14:69793624-69831037	Strong transcription Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv564966	chr14:69793624-69831037	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69791000-69817400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr14:69792200-69812000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr14:69793400-69818800	Weak transcription	Spleen	Spleen
4	chr14:69793400-69821200	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr14:69793400-69822600	Weak transcription	Brain Angular Gyrus	brain
6	chr14:69800800-69815200	Weak transcription	Brain Germinal Matrix	brain
7	chr14:69800800-69821800	Weak transcription	Brain Hippocampus Middle	brain
8	chr14:69801200-69812000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr14:69803400-69820800	Weak transcription	Esophagus	oesophagus
10	chr14:69804200-69812600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr14:69806200-69818400	Weak transcription	Fetal Muscle Leg	muscle
12	chr14:69806400-69813600	Weak transcription	Fetal Intestine Small	intestine
13	chr14:69806600-69814600	Weak transcription	Stomach Smooth Muscle	stomach
14	chr14:69807000-69821000	Weak transcription	Fetal Intestine Large	intestine
15	chr14:69808600-69811600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr14:69808600-69813800	Weak transcription	Fetal Brain Female	brain
17	chr14:69808600-69818600	Weak transcription	Fetal Brain Male	brain
18	chr14:69808600-69821600	Weak transcription	Brain Anterior Caudate	brain
19	chr14:69808800-69815200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
20	chr14:69809000-69810800	Weak transcription	Fetal Muscle Trunk	muscle
21	chr14:69809400-69811400	Enhancers	Pancreas	Pancrea
22	chr14:69809400-69812200	Enhancers	Breast Myoepithelial Primary Cells	Breast
23	chr14:69809600-69810800	Enhancers	Duodenum Mucosa	Duodenum
24	chr14:69809600-69813800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr14:69809800-69810800	Enhancers	Stomach Mucosa	stomach
26	chr14:69809800-69822800	Weak transcription	Right Atrium	heart
27	chr14:69810000-69814200	Weak transcription	Right Ventricle	heart
28	chr14:69810200-69818000	Weak transcription	Cortex derived primary cultured neurospheres	brain
29	chr14:69810200-69821600	Weak transcription	Colon Smooth Muscle	Colon
30	chr14:69810200-69822000	Weak transcription	Duodenum Smooth Muscle	Duodenum
31	chr14:69810400-69814000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr14:69810600-69817200	Weak transcription	Left Ventricle	heart

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