Variant report

Variant	rs345370
Chromosome Location	chr4:86756230-86756231
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:86747317..86749374-chr4:86754151..86756768,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000138639	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11942119	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12499386	0.82[CEU][hapmap]
rs12500124	0.82[CEU][hapmap]
rs12504839	0.82[CEU][hapmap]
rs17010960	0.82[CEU][hapmap]
rs17011016	1.00[CEU][hapmap];0.81[CHB][hapmap];0.89[JPT][hapmap];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17011065	1.00[CEU][hapmap];0.81[CHB][hapmap];0.90[JPT][hapmap];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17011069	1.00[CEU][hapmap];0.81[CHB][hapmap];0.90[JPT][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs345364	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs345365	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4693741	0.96[ASN][1000 genomes]
rs4693742	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4693743	1.00[CEU][hapmap];0.80[CHB][hapmap];0.81[CHD][hapmap];0.97[GIH][hapmap];0.85[JPT][hapmap];0.95[MEX][hapmap];0.91[TSI][hapmap];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4693744	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs66596399	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs66681569	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs67579023	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs67631333	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs67886916	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72658238	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3450999	chr4:86485840-86773745	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
2	nsv879518	chr4:86739805-86778943	Active TSS Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv830000	chr4:86745341-86909059	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv470049	chr4:86750699-86776488	Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:86737600-86763200	Weak transcription	Primary B cells from cord blood	blood
2	chr4:86749400-86758200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr4:86749400-86761600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr4:86749400-86787600	Weak transcription	Pancreas	Pancrea
5	chr4:86749600-86761200	Weak transcription	Ovary	ovary
6	chr4:86749600-86763600	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr4:86749800-86758000	Weak transcription	NHLF	lung
8	chr4:86750000-86757800	Weak transcription	Fetal Stomach	stomach
9	chr4:86750000-86809200	Weak transcription	Fetal Muscle Trunk	muscle
10	chr4:86751200-86761400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr4:86751600-86757200	Weak transcription	Skeletal Muscle Female	skeletal muscle
12	chr4:86751600-86757600	Weak transcription	HSMM	muscle
13	chr4:86751600-86757800	Weak transcription	Skeletal Muscle Male	skeletal muscle
14	chr4:86751800-86757400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr4:86751800-86761600	Weak transcription	Pancreatic Islets	Pancreatic Islet
16	chr4:86753200-86761200	Weak transcription	Stomach Mucosa	stomach
17	chr4:86753600-86758000	Weak transcription	Primary B cells from peripheral blood	blood
18	chr4:86754600-86757200	Weak transcription	NHDF-Ad	bronchial
19	chr4:86754800-86757400	Weak transcription	Adipose Nuclei	Adipose
20	chr4:86754800-86757800	Weak transcription	Fetal Muscle Leg	muscle
21	chr4:86754800-86761200	Weak transcription	HUVEC	blood vessel
22	chr4:86754800-86761400	Weak transcription	Stomach Smooth Muscle	stomach
23	chr4:86755000-86758200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr4:86755800-86757200	Weak transcription	HSMMtube	muscle
25	chr4:86756000-86757200	Weak transcription	Fetal Kidney	kidney

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