Variant report

Variant	rs34537329
Chromosome Location	chr5:44523439-44523440
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10055724	0.82[AMR][1000 genomes]
rs10512854	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs12108957	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs12109250	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs12187906	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs13153459	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs13154743	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs13160582	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs13162578	0.85[AMR][1000 genomes]
rs13169165	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs13170860	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs13173094	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs13179281	0.82[AMR][1000 genomes]
rs13190489	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs1482664	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs16901870	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs16901871	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs16901875	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs16901883	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs34031096	0.81[AMR][1000 genomes]
rs34119371	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs34391578	0.81[AMR][1000 genomes]
rs35420014	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs35656601	0.82[AMR][1000 genomes]
rs3898543	0.87[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs56340528	0.86[AMR][1000 genomes]
rs56724254	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs57060529	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs57068965	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs59836876	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs67485736	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs67667620	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs6862324	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs6865011	0.87[AMR][1000 genomes]
rs6865230	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs6865330	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs6866555	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs6883915	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs72748075	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs7706806	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs7713453	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs7727980	0.83[AMR][1000 genomes]
rs7730866	0.87[AMR][1000 genomes]
rs873475	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs960060	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs9686344	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs9765008	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830277	chr5:44383402-44566881	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1024923	chr5:44439853-44528314	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:44512000-44525600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr5:44520200-44537000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr5:44523200-44523800	Weak transcription	Fetal Lung	lung
4	chr5:44523200-44525800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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