Variant report

Variant	rs34537571
Chromosome Location	chr7:25298131-25298132
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1008929	0.88[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11769704	1.00[ASN][1000 genomes]
rs11770584	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11770932	0.95[ASN][1000 genomes]
rs11773410	0.95[ASN][1000 genomes]
rs12530684	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12538631	0.96[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13223273	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17304305	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2391107	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6961642	0.86[ASN][1000 genomes]
rs73092102	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9784962	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv606424	chr7:24982529-25466521	Genic enhancers Flanking Active TSS Active TSS Enhancers Weak transcription Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	79 gene(s)	inside rSNPs	diseases
2	nsv606426	chr7:25254125-25621579	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:25286400-25299200	Weak transcription	Fetal Kidney	kidney
2	chr7:25295200-25301000	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr7:25295800-25301000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr7:25296000-25299600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr7:25296200-25299200	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr7:25296200-25299200	Weak transcription	Brain Germinal Matrix	brain
7	chr7:25296200-25299200	Weak transcription	Duodenum Mucosa	Duodenum
8	chr7:25296200-25299200	Weak transcription	Rectal Mucosa Donor 31	rectum
9	chr7:25296200-25300800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr7:25296400-25299200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr7:25296400-25299200	Weak transcription	Rectal Mucosa Donor 29	rectum
12	chr7:25296400-25299400	Weak transcription	Fetal Stomach	stomach
13	chr7:25296600-25299200	Weak transcription	Fetal Intestine Small	intestine
14	chr7:25296600-25300400	Weak transcription	Fetal Brain Female	brain
15	chr7:25296800-25299200	Weak transcription	Fetal Heart	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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