Variant report

Variant	rs34538250
Chromosome Location	chr4:62522349-62522350
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11939481	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12504607	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13123468	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1497896	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1497909	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1497921	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1909077	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28721965	0.98[ASN][1000 genomes]
rs6551640	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs66614141	0.82[ASN][1000 genomes]
rs6825200	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6851424	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7656051	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461377	chr4:62368762-62883431	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv594328	chr4:62368762-62883431	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1004815	chr4:62398737-62553769	ZNF genes & repeats Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv537110	chr4:62398737-62553769	ZNF genes & repeats Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv879077	chr4:62419426-62545435	Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:62519200-62523600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr4:62519400-62528200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr4:62519600-62524400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr4:62519600-62527600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr4:62520400-62527800	Weak transcription	Pancreas	Pancrea
6	chr4:62521400-62522400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr4:62521600-62523000	Enhancers	Brain Substantia Nigra	brain
8	chr4:62521800-62522600	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr4:62521800-62522600	Enhancers	Brain Angular Gyrus	brain
10	chr4:62521800-62522600	Enhancers	Brain Cingulate Gyrus	brain
11	chr4:62521800-62522800	Enhancers	Brain Inferior Temporal Lobe	brain
12	chr4:62522000-62522400	Enhancers	Brain Anterior Caudate	brain
13	chr4:62522000-62522600	Enhancers	HUES48 Cell Line	embryonic stem cell
14	chr4:62522000-62523000	Enhancers	Brain Hippocampus Middle	brain
15	chr4:62522200-62522600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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