Variant report

Variant	rs34543537
Chromosome Location	chr7:47705692-47705693
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:47685575..47687990-chr7:47705109..47707807,2	MCF-7	breast:
2	chr7:47704100..47706174-chr7:47707596..47709114,2	MCF-7	breast:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs12532470	0.81[ASN][1000 genomes]
rs12702364	0.82[ASN][1000 genomes]
rs34995765	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026223	chr7:47560728-48243287	Genic enhancers Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv888003	chr7:47694270-47907214	Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:47695000-47711000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr7:47699800-47705800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr7:47699800-47706000	Weak transcription	Pancreas	Pancrea
4	chr7:47700000-47708800	Weak transcription	Spleen	Spleen
5	chr7:47701000-47708800	Weak transcription	Right Ventricle	heart
6	chr7:47701200-47705800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr7:47701600-47705800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr7:47701600-47708400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr7:47701600-47708800	Weak transcription	Fetal Kidney	kidney
10	chr7:47701600-47709000	Weak transcription	Lung	lung
11	chr7:47701800-47706400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr7:47701800-47707800	Weak transcription	Primary B cells from cord blood	blood
13	chr7:47702600-47708200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr7:47703400-47705800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr7:47703400-47707400	Enhancers	Fetal Intestine Large	intestine
16	chr7:47703600-47708800	Weak transcription	Psoas Muscle	Psoas
17	chr7:47703800-47705800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr7:47703800-47708600	Weak transcription	Duodenum Mucosa	Duodenum
19	chr7:47703800-47708600	Weak transcription	Skeletal Muscle Male	skeletal muscle
20	chr7:47703800-47708800	Weak transcription	Liver	Liver
21	chr7:47703800-47709000	Weak transcription	Skeletal Muscle Female	skeletal muscle
22	chr7:47704200-47706800	Enhancers	HepG2	liver
23	chr7:47704600-47710400	Weak transcription	Fetal Lung	lung
24	chr7:47704800-47705800	Weak transcription	HSMMtube	muscle
25	chr7:47705000-47706400	Enhancers	A549	lung
26	chr7:47705000-47708800	Weak transcription	Fetal Muscle Leg	muscle
27	chr7:47705200-47706000	Weak transcription	Placenta	Placenta
28	chr7:47705200-47706800	Enhancers	Fetal Muscle Trunk	muscle
29	chr7:47705200-47709000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
30	chr7:47705400-47706800	Enhancers	Breast Myoepithelial Primary Cells	Breast
31	chr7:47705600-47706000	Weak transcription	Fetal Intestine Small	intestine
32	chr7:47705600-47706600	Enhancers	Cortex derived primary cultured neurospheres	brain
33	chr7:47705600-47706800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr7:47705600-47706800	Enhancers	NHLF	lung
35	chr7:47705600-47707000	Weak transcription	Primary B cells from peripheral blood	blood
36	chr7:47705600-47707200	Enhancers	Muscle Satellite Cultured Cells	--
37	chr7:47705600-47707200	Enhancers	Osteobl	bone

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