Variant report

Variant	rs34548598
Chromosome Location	chr2:100653048-100653049
allele	-/A
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003343	chr2:100241560-100848900	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv535843	chr2:100241560-100848900	Genic enhancers Enhancers Weak transcription Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	esv3425414	chr2:100652945-100655493	Weak transcription Enhancers Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	esv2358766	chr2:100653048-100653049	Weak transcription Enhancers	lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:100624800-100657800	Weak transcription	Brain Germinal Matrix	brain
2	chr2:100633600-100660600	Weak transcription	Lung	lung
3	chr2:100637200-100658400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr2:100639000-100660600	Weak transcription	Primary T cells from cord blood	blood
5	chr2:100639600-100657000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr2:100644600-100668400	Weak transcription	Primary hematopoietic stem cells	blood
7	chr2:100646400-100662600	Weak transcription	Gastric	stomach
8	chr2:100648200-100666800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr2:100650600-100656800	Weak transcription	Fetal Brain Female	brain
10	chr2:100651800-100659600	Weak transcription	Left Ventricle	heart
11	chr2:100652000-100656200	Weak transcription	Primary B cells from peripheral blood	blood
12	chr2:100652600-100653800	Enhancers	Fetal Brain Male	brain
13	chr2:100652800-100661400	Weak transcription	Ovary	ovary
14	chr2:100653000-100653600	Enhancers	Fetal Lung	lung
15	chr2:100653000-100656000	Weak transcription	Primary B cells from cord blood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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