Variant report

Variant	rs34552077
Chromosome Location	chr9:84766055-84766056
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs13287339	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049305	chr9:84667596-84918690	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv831640	chr9:84695958-84880535	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:84763800-84766200	Enhancers	NHDF-Ad	bronchial
2	chr9:84764600-84766200	Weak transcription	NH-A	brain
3	chr9:84764600-84766800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr9:84764600-84767000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr9:84764800-84766800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr9:84764800-84766800	Weak transcription	NHLF	lung
7	chr9:84764800-84767800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr9:84765200-84766200	Enhancers	Fetal Kidney	kidney
9	chr9:84765600-84766800	Weak transcription	Osteobl	bone
10	chr9:84765600-84768000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr9:84766000-84767200	Enhancers	Pancreatic Islets	Pancreatic Islet

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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