Variant report

Variant	rs34554755
Chromosome Location	chr3:111718443-111718444
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	YY1	chr3:111717968-111718493	H1-hESC	embryonic stem cell:	n/a	n/a
2	CTBP2	chr3:111717498-111718503	H1-hESC	embryonic stem cell:	n/a	n/a
3	MAX	chr3:111717983-111718515	H1-hESC	embryonic stem cell:	n/a	n/a
4	REST	chr3:111717123-111720923	H1-neurons	neurons:	n/a	chr3:111718160-111718173
5	TAF1	chr3:111717868-111718619	H1-hESC	embryonic stem cell:	n/a	n/a
6	TAF1	chr3:111717334-111719486	H1-neurons	neurons:	n/a	n/a
7	POLR2A	chr3:111717412-111718734	H1-hESC	embryonic stem cell:	n/a	n/a
8	REST	chr3:111717351-111720014	H1-neurons	neurons:	n/a	chr3:111718160-111718173
9	YY1	chr3:111717620-111718573	SK-N-SH_RA	brain:	n/a	n/a
10	YY1	chr3:111717786-111718576	SK-N-SH	brain:	n/a	n/a
11	YY1	chr3:111718024-111718462	SK-N-SH_RA	brain:	n/a	n/a
12	POLR2A	chr3:111717348-111720778	H1-neurons	neurons:	n/a	n/a
13	TBP	chr3:111717666-111718557	H1-hESC	embryonic stem cell:	n/a	n/a
14	TAF1	chr3:111717475-111718629	H1-neurons	neurons:	n/a	n/a
15	SIN3AK20	chr3:111717933-111718478	H1-hESC	embryonic stem cell:	n/a	n/a
16	MAX	chr3:111717433-111718492	SK-N-SH	brain:	n/a	n/a
17	POLR2A	chr3:111717341-111719599	H1-neurons	neurons:	n/a	n/a
18	RFX5	chr3:111717925-111718563	H1-hESC	embryonic stem cell:	n/a	chr3:111718101-111718110 chr3:111718471-111718480 chr3:111718541-111718549
19	YY1	chr3:111717486-111718628	H1-hESC	embryonic stem cell:	n/a	n/a
20	MXI1	chr3:111717285-111720944	SK-N-SH	brain:	n/a	n/a
21	SIN3A	chr3:111717447-111718559	H1-hESC	embryonic stem cell:	n/a	chr3:111718160-111718173
22	POLR2A	chr3:111717787-111718596	H1-hESC	embryonic stem cell:	n/a	n/a

Variant related genes	Relation type
TAGLN3	TF binding region

rs_ID	r²[population]
rs1282962	1.00[MKK][hapmap]

Chromatin state (count:112 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:111708600-111720800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
2	chr3:111712000-111721000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr3:111712000-111721000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
4	chr3:111717200-111720000	Active TSS	Fetal Brain Female	brain
5	chr3:111717400-111718600	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr3:111717400-111718600	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr3:111717400-111718600	Flanking Bivalent TSS/Enh	Fetal Adrenal Gland	Adrenal Gland
8	chr3:111717400-111718600	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
9	chr3:111717400-111718600	Flanking Bivalent TSS/Enh	Fetal Stomach	stomach
10	chr3:111717400-111718600	Enhancers	Sigmoid Colon	Sigmoid Colon
11	chr3:111717400-111718800	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
12	chr3:111717400-111718800	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
13	chr3:111717400-111718800	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr3:111717400-111718800	Bivalent/Poised TSS	Fetal Kidney	kidney
15	chr3:111717400-111719200	Active TSS	H9 Cell Line	embryonic stem cell
16	chr3:111717400-111719600	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
17	chr3:111717400-111719600	Active TSS	Brain Germinal Matrix	brain
18	chr3:111717400-111719800	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
19	chr3:111717400-111720400	Active TSS	Pancreatic Islets	Pancreatic Islet
20	chr3:111717400-111721600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
21	chr3:111717600-111718600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr3:111717600-111718600	Active TSS	Brain Substantia Nigra	brain
23	chr3:111717600-111718600	Active TSS	Fetal Lung	lung
24	chr3:111717600-111718600	Flanking Bivalent TSS/Enh	Skeletal Muscle Male	skeletal muscle
25	chr3:111717600-111718600	Bivalent Enhancer	Small Intestine	intestine
26	chr3:111717600-111718600	Flanking Bivalent TSS/Enh	GM12878-XiMat	blood
27	chr3:111717600-111718600	Flanking Bivalent TSS/Enh	Monocytes-CD14+_RO01746	blood
28	chr3:111717600-111718800	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
29	chr3:111717600-111718800	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
30	chr3:111717600-111718800	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
31	chr3:111717600-111719000	Bivalent/Poised TSS	ES-WA7 Cell Line	embryonic stem cell
32	chr3:111717600-111719000	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr3:111717600-111719000	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
34	chr3:111717600-111719000	Active TSS	Primary T regulatory cells fromperipheralblood	blood
35	chr3:111717600-111719000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr3:111717600-111719000	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
37	chr3:111717600-111719000	Flanking Bivalent TSS/Enh	Fetal Muscle Leg	muscle
38	chr3:111717600-111719000	Flanking Bivalent TSS/Enh	HepG2	liver
39	chr3:111717600-111719200	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
40	chr3:111717600-111719200	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr3:111717600-111719400	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
42	chr3:111717600-111719600	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
43	chr3:111717600-111719800	Active TSS	Brain Hippocampus Middle	brain
44	chr3:111717600-111720000	Active TSS	Fetal Brain Male	brain
45	chr3:111717600-111720800	Active TSS	Brain Anterior Caudate	brain
46	chr3:111717600-111722400	Active TSS	Brain Inferior Temporal Lobe	brain
47	chr3:111717800-111718600	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
48	chr3:111717800-111718600	Bivalent/Poised TSS	Duodenum Smooth Muscle	Duodenum
49	chr3:111717800-111718800	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
50	chr3:111717800-111718800	Active TSS	Cortex derived primary cultured neurospheres	brain

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