Variant report

Variant	rs34556469
Chromosome Location	chr10:89942456-89942457
allele	-/TG
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs58062052	1.00[AMR][1000 genomes]
rs7080483	1.00[AMR][1000 genomes]
rs7081016	1.00[AMR][1000 genomes]
rs74146256	1.00[AMR][1000 genomes]
rs7903749	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831940	chr10:89811247-89989199	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:89938000-89946000	Weak transcription	Aorta	Aorta
2	chr10:89939000-89950000	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr10:89940800-89943800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr10:89942000-89942600	Enhancers	Osteobl	bone
5	chr10:89942000-89943000	Enhancers	GM12878-XiMat	blood
6	chr10:89942200-89945200	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr10:89942200-89946000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr10:89942400-89943000	Enhancers	Fetal Lung	lung

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links