Variant report

Variant	rs34556690
Chromosome Location	chr9:14424796-14424797
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:14406406..14407031-chr9:14424343..14425109,2	MCF-7	breast:
2	chr9:14406370..14407031-chr9:14424343..14425297,2	MCF-7	breast:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs58625135	1.00[AMR][1000 genomes]
rs632689	1.00[AMR][1000 genomes]
rs663023	1.00[AMR][1000 genomes]
rs677339	1.00[AMR][1000 genomes]
rs7025823	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029491	chr9:14033607-14942373	Enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv915804	chr9:14182608-14903050	Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	nsv916811	chr9:14210978-14542068	Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
4	nsv831516	chr9:14280695-14437445	Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
5	nsv892600	chr9:14370172-14469146	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:14418000-14425400	Enhancers	iPS-18 Cell Line	embryonic stem cell
2	chr9:14419800-14424800	Weak transcription	Ovary	ovary
3	chr9:14419800-14425000	Weak transcription	Right Atrium	heart
4	chr9:14419800-14428400	Weak transcription	Fetal Stomach	stomach
5	chr9:14420000-14433400	Weak transcription	Fetal Brain Female	brain
6	chr9:14420400-14425400	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr9:14421200-14425400	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr9:14422400-14425000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
9	chr9:14422400-14425400	Enhancers	iPS-20b Cell Line	embryonic stem cell
10	chr9:14422600-14425200	Enhancers	NHLF	lung
11	chr9:14423000-14424800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr9:14423200-14425800	Enhancers	NHDF-Ad	bronchial
13	chr9:14423400-14425400	Enhancers	ES-I3 Cell Line	embryonic stem cell
14	chr9:14423400-14425400	Enhancers	HSMMtube	muscle
15	chr9:14423800-14424800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr9:14423800-14425200	Enhancers	H1 Cell Line	embryonic stem cell
17	chr9:14423800-14425200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr9:14423800-14425200	Enhancers	Fetal Lung	lung
19	chr9:14423800-14425400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr9:14423800-14425400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr9:14423800-14426200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr9:14424000-14425400	Enhancers	H9 Cell Line	embryonic stem cell
23	chr9:14424000-14425400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr9:14424000-14425600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr9:14424200-14425400	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr9:14424200-14425400	Enhancers	Fetal Kidney	kidney
27	chr9:14424200-14433200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr9:14424400-14424800	Weak transcription	Fetal Muscle Leg	muscle
29	chr9:14424400-14424800	Enhancers	Right Ventricle	heart
30	chr9:14424400-14425000	Enhancers	Osteobl	bone
31	chr9:14424400-14425400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
32	chr9:14424400-14425400	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr9:14424400-14428200	Weak transcription	Skeletal Muscle Female	skeletal muscle
34	chr9:14424400-14429800	Enhancers	Fetal Heart	heart
35	chr9:14424600-14424800	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
36	chr9:14424600-14425400	Enhancers	iPS-15b Cell Line	embryonic stem cell
37	chr9:14424600-14425400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
38	chr9:14424600-14425600	Enhancers	Placenta	Placenta
39	chr9:14424600-14428600	Weak transcription	HUVEC	blood vessel

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links