Variant report

Variant	rs34558207
Chromosome Location	chr2:11297593-11297594
allele	-/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:11296019..11298621-chr2:11300609..11302864,3	K562	blood:
2	chr2:11281751..11284886-chr2:11297524..11300399,3	MCF-7	breast:
3	chr2:11294400..11297941-chr2:11298345..11302243,10	MCF-7	breast:
4	chr2:11295929..11299678-chr2:11300609..11303606,5	K562	blood:
5	chr2:11297321..11299192-chr2:11354600..11357317,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000162976	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10166950	0.80[AFR][1000 genomes]
rs10183455	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10183461	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11676318	0.80[AFR][1000 genomes]
rs11681385	0.80[AFR][1000 genomes]
rs12185728	0.95[AMR][1000 genomes]
rs28433865	0.80[AFR][1000 genomes]
rs35208606	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs55935965	0.80[AFR][1000 genomes]
rs7601432	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv520789	chr2:11259067-11312224	Weak transcription Flanking Bivalent TSS/Enh Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:80 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:11296200-11298200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr2:11296200-11298200	Enhancers	Lung	lung
3	chr2:11296200-11298200	Enhancers	Spleen	Spleen
4	chr2:11296200-11299600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr2:11296200-11329400	Weak transcription	Gastric	stomach
6	chr2:11296200-11412600	Weak transcription	Aorta	Aorta
7	chr2:11296400-11297600	Enhancers	Primary T helper naive cells from peripheral blood	blood
8	chr2:11296400-11297600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
9	chr2:11296400-11297600	Bivalent Enhancer	Fetal Muscle Trunk	muscle
10	chr2:11296400-11297600	Enhancers	Right Ventricle	heart
11	chr2:11296400-11297800	Enhancers	Breast Myoepithelial Primary Cells	Breast
12	chr2:11296400-11297800	Enhancers	Primary T helper cells PMA-I stimulated	--
13	chr2:11296400-11297800	Enhancers	Primary T helper cells fromperipheralblood	blood
14	chr2:11296400-11298200	Enhancers	Primary T cells fromperipheralblood	blood
15	chr2:11296400-11298200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr2:11296400-11298200	Enhancers	Duodenum Mucosa	Duodenum
17	chr2:11296400-11298200	Enhancers	Fetal Brain Male	brain
18	chr2:11296400-11301000	Weak transcription	GM12878-XiMat	blood
19	chr2:11296400-11303600	Weak transcription	HSMMtube	muscle
20	chr2:11296400-11306400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr2:11296400-11307200	Weak transcription	Thymus	Thymus
22	chr2:11296400-11308600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr2:11296400-11309600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr2:11296400-11314200	Weak transcription	H9 Cell Line	embryonic stem cell
25	chr2:11296400-11314800	Weak transcription	Primary hematopoietic stem cells	blood
26	chr2:11296400-11315200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr2:11296400-11315200	Weak transcription	Brain Substantia Nigra	brain
28	chr2:11296400-11315400	Weak transcription	Brain Angular Gyrus	brain
29	chr2:11296400-11318800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr2:11296600-11297600	Enhancers	Fetal Brain Female	brain
31	chr2:11296600-11297800	Enhancers	Brain Inferior Temporal Lobe	brain
32	chr2:11296600-11297800	Enhancers	Skeletal Muscle Male	skeletal muscle
33	chr2:11296600-11298200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
34	chr2:11296600-11300200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr2:11296600-11300600	Weak transcription	Fetal Intestine Small	intestine
36	chr2:11296600-11301000	Weak transcription	Fetal Thymus	thymus
37	chr2:11296600-11301800	Weak transcription	Primary T cells from cord blood	blood
38	chr2:11296600-11303600	Weak transcription	Rectal Smooth Muscle	rectum
39	chr2:11296600-11304000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr2:11296600-11306200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
41	chr2:11296600-11315200	Weak transcription	Brain Cingulate Gyrus	brain
42	chr2:11296600-11315200	Weak transcription	Brain Hippocampus Middle	brain
43	chr2:11296600-11315200	Weak transcription	NHDF-Ad	bronchial
44	chr2:11296600-11319200	Weak transcription	Fetal Lung	lung
45	chr2:11296800-11297600	Enhancers	Monocytes-CD14+_RO01746	blood
46	chr2:11296800-11298000	Enhancers	Primary monocytes fromperipheralblood	blood
47	chr2:11296800-11300800	Weak transcription	Primary B cells from cord blood	blood
48	chr2:11296800-11303600	Weak transcription	Left Ventricle	heart
49	chr2:11296800-11303800	Weak transcription	Colon Smooth Muscle	Colon
50	chr2:11296800-11304200	Weak transcription	Esophagus	oesophagus

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