Variant report

Variant	rs34558750
Chromosome Location	chr20:41558947-41558948
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs172271	1.00[AMR][1000 genomes]
rs206640	1.00[EUR][1000 genomes]
rs206663	0.83[AMR][1000 genomes]
rs206664	0.83[AMR][1000 genomes]
rs206667	1.00[AMR][1000 genomes]
rs206670	1.00[AMR][1000 genomes]
rs206683	0.91[AMR][1000 genomes]
rs206684	0.83[AMR][1000 genomes]
rs484898	1.00[AMR][1000 genomes]
rs558832	1.00[AMR][1000 genomes]
rs58163550	1.00[AMR][1000 genomes]
rs6030563	1.00[EUR][1000 genomes]
rs61297153	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7272450	1.00[AMR][1000 genomes]
rs73271801	0.89[EUR][1000 genomes]
rs73907403	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73907405	1.00[EUR][1000 genomes]
rs73907407	1.00[EUR][1000 genomes]
rs73907417	0.87[EUR][1000 genomes]
rs73910621	1.00[AMR][1000 genomes]
rs8115069	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1063450	chr20:41409901-41880620	Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1060690	chr20:41413369-41851935	Enhancers ZNF genes & repeats Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Genic enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1066088	chr20:41417205-42060036	Enhancers Bivalent Enhancer Active TSS Strong transcription Weak transcription Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv1060468	chr20:41518010-41700012	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv1061053	chr20:41521471-41704874	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:41555000-41560200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr20:41558200-41559000	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr20:41558400-41559000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

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