Variant report

Variant	rs34569640
Chromosome Location	chr3:58276426-58276427
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10272125	0.82[EUR][1000 genomes]
rs11505840	0.85[EUR][1000 genomes]
rs2082743	0.82[EUR][1000 genomes]
rs28449324	0.82[EUR][1000 genomes]
rs34288759	0.82[EUR][1000 genomes]
rs7798789	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529990	chr3:57897017-58395655	Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv528147	chr3:57915474-58370177	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
3	nsv834703	chr3:58058518-58284497	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv1001814	chr3:58144608-58339924	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
5	nsv590369	chr3:58269712-58317692	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
6	esv3384845	chr3:58274062-58278060	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:58238600-58277400	Weak transcription	GM12878-XiMat	blood
2	chr3:58240600-58281600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
3	chr3:58258800-58281600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr3:58258800-58282000	Weak transcription	NHEK	skin
5	chr3:58260600-58282400	Weak transcription	NHDF-Ad	bronchial
6	chr3:58260800-58285400	Weak transcription	Fetal Brain Male	brain
7	chr3:58261000-58281000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr3:58261000-58284000	Weak transcription	Pancreas	Pancrea
9	chr3:58261400-58282200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr3:58264800-58278000	Weak transcription	Fetal Thymus	thymus
11	chr3:58268000-58280600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr3:58269200-58282000	Weak transcription	Colonic Mucosa	Colon
13	chr3:58271400-58276600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr3:58271400-58280000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr3:58271400-58280400	Weak transcription	Primary hematopoietic stem cells	blood
16	chr3:58271400-58281000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr3:58271400-58282000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr3:58272400-58281000	Weak transcription	Colon Smooth Muscle	Colon
19	chr3:58273400-58281800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
20	chr3:58273400-58283400	Weak transcription	Thymus	Thymus
21	chr3:58273600-58277000	Weak transcription	Right Ventricle	heart
22	chr3:58274000-58278800	Weak transcription	Gastric	stomach
23	chr3:58274200-58279400	Weak transcription	Primary monocytes fromperipheralblood	blood
24	chr3:58274400-58276600	Weak transcription	Primary T cells fromperipheralblood	blood
25	chr3:58274400-58278800	Weak transcription	Sigmoid Colon	Sigmoid Colon
26	chr3:58274400-58279200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr3:58274400-58283800	Weak transcription	Lung	lung
28	chr3:58274400-58283800	Weak transcription	Skeletal Muscle Female	skeletal muscle
29	chr3:58274400-58285000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
30	chr3:58274400-58285600	Weak transcription	Ovary	ovary
31	chr3:58274600-58277400	Weak transcription	Spleen	Spleen
32	chr3:58274600-58277600	Weak transcription	Fetal Brain Female	brain
33	chr3:58274600-58278600	Weak transcription	Brain Angular Gyrus	brain
34	chr3:58274600-58278600	Weak transcription	Brain Hippocampus Middle	brain
35	chr3:58274600-58278800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
36	chr3:58274600-58278800	Weak transcription	Brain Anterior Caudate	brain
37	chr3:58274600-58278800	Weak transcription	Duodenum Mucosa	Duodenum
38	chr3:58274600-58278800	Weak transcription	Skeletal Muscle Male	skeletal muscle
39	chr3:58274600-58279000	Weak transcription	Liver	Liver
40	chr3:58274600-58279000	Weak transcription	Hela-S3	cervix
41	chr3:58274600-58280800	Weak transcription	Aorta	Aorta
42	chr3:58274600-58281000	Weak transcription	Fetal Stomach	stomach
43	chr3:58274600-58281600	Weak transcription	Duodenum Smooth Muscle	Duodenum
44	chr3:58274600-58282000	Weak transcription	Primary B cells from peripheral blood	blood
45	chr3:58274600-58282200	Weak transcription	Primary T cells from cord blood	blood
46	chr3:58274600-58282200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
47	chr3:58274600-58282200	Weak transcription	Left Ventricle	heart
48	chr3:58274600-58282200	Weak transcription	Rectal Mucosa Donor 29	rectum
49	chr3:58274600-58282200	Weak transcription	Monocytes-CD14+_RO01746	blood
50	chr3:58274600-58282600	Weak transcription	Rectal Smooth Muscle	rectum

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