Variant report
| Variant | rs34571231 |
|---|---|
| Chromosome Location | chr2:142246447-142246448 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:25)
| rs_ID | r2[population] |
|---|---|
| rs10496884 | 0.96[EUR][1000 genomes] |
| rs12992656 | 0.91[EUR][1000 genomes] |
| rs12993733 | 0.96[EUR][1000 genomes] |
| rs12994255 | 0.88[EUR][1000 genomes] |
| rs13001306 | 0.96[EUR][1000 genomes] |
| rs13001716 | 0.95[ASN][1000 genomes] |
| rs13009586 | 0.87[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs13018345 | 0.87[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs13393425 | 0.82[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs17616060 | 0.96[EUR][1000 genomes] |
| rs34050146 | 0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs34470585 | 0.87[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs36057199 | 0.81[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs4340448 | 0.87[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs4363970 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4588128 | 0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs60727330 | 0.87[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs66741925 | 0.88[EUR][1000 genomes] |
| rs6717454 | 0.97[EUR][1000 genomes] |
| rs6741998 | 0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs6746208 | 0.81[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs6748629 | 0.94[EUR][1000 genomes] |
| rs6759190 | 0.87[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs73963094 | 0.87[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs7585876 | 0.96[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv817518 | chr2:141714174-142287302 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 2 | nsv583203 | chr2:142055133-142378975 | Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers | Chromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| 3 | nsv875234 | chr2:142156180-142254119 | Enhancers Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats | Chromatin interactive region | 1 gene(s) | inside rSNPs | n/a |
| 4 | nsv875240 | chr2:142199421-142347455 | Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer | Chromatin interactive region | 2 gene(s) | inside rSNPs | n/a |
| 5 | nsv875243 | chr2:142219033-142259592 | Enhancers Weak transcription Genic enhancers | Chromatin interactive region | 1 gene(s) | inside rSNPs | n/a |
| 6 | nsv459607 | chr2:142226768-142263400 | Enhancers Weak transcription Genic enhancers | Chromatin interactive region | 1 gene(s) | inside rSNPs | n/a |
| 7 | nsv583207 | chr2:142226768-142263400 | Enhancers Weak transcription Genic enhancers | Chromatin interactive region | 1 gene(s) | inside rSNPs | n/a |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr2:142239400-142256400 | Weak transcription | H1 BMP4 Derived Mesendoderm Cultured Cells | ES cell derived |
