Variant report

Variant	rs345787
Chromosome Location	chr15:33391898-33391899
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11858145	1.00[CHB][hapmap];0.91[JPT][hapmap];0.85[EUR][1000 genomes]
rs1349964	1.00[CHB][hapmap];0.81[JPT][hapmap];0.84[EUR][1000 genomes]
rs2604169	0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2730050	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs345765	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs345771	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs345772	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs345773	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs345774	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs345777	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs345782	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs345789	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs345790	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs345798	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs345800	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs345801	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4780075	0.85[EUR][1000 genomes]
rs7171647	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv903979	chr15:33144202-33550256	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1052966	chr15:33149753-33541951	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv542340	chr15:33149753-33541951	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
4	nsv903981	chr15:33207082-33550256	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
5	nsv568918	chr15:33244672-33446971	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv903982	chr15:33282844-33616150	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
7	nsv903983	chr15:33388030-33550256	Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:33384800-33395000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr15:33384800-33395400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
3	chr15:33385000-33396400	Weak transcription	Fetal Kidney	kidney
4	chr15:33388800-33392200	Weak transcription	Monocytes-CD14+_RO01746	blood
5	chr15:33389200-33393000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr15:33389400-33394200	Enhancers	NHDF-Ad	bronchial
7	chr15:33389800-33392400	Enhancers	HSMM	muscle
8	chr15:33389800-33392800	Enhancers	Hela-S3	cervix
9	chr15:33389800-33394200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr15:33390400-33392200	Enhancers	NHLF	lung
11	chr15:33390400-33392800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr15:33390400-33392800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr15:33390800-33392000	Weak transcription	Primary monocytes fromperipheralblood	blood
14	chr15:33390800-33392200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr15:33390800-33392200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr15:33390800-33392400	Enhancers	Osteobl	bone
17	chr15:33390800-33392600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr15:33390800-33394200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr15:33390800-33396200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr15:33391000-33392000	Enhancers	HSMMtube	muscle
21	chr15:33391000-33396200	Weak transcription	HUVEC	blood vessel
22	chr15:33391000-33396400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr15:33391000-33396600	Weak transcription	Fetal Muscle Leg	muscle
24	chr15:33391200-33392400	Enhancers	Muscle Satellite Cultured Cells	--
25	chr15:33391200-33395400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr15:33391200-33396400	Weak transcription	NH-A	brain
27	chr15:33391400-33392400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
28	chr15:33391800-33393000	Enhancers	Primary hematopoietic stem cells short term culture	blood
29	chr15:33391800-33396000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr15:33391800-33396000	Weak transcription	NHEK	skin

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