Variant report

Variant	rs345799
Chromosome Location	chr15:33380491-33380492
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:33356120..33364271-chr15:33368982..33380679,29	MCF-7	breast:
2	chr15:33368160..33370967-chr15:33379580..33382279,2	K562	blood:

Variant related genes	Relation type
ENSG00000248905	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs12899651	0.86[EUR][1000 genomes]
rs12900388	0.86[EUR][1000 genomes]
rs12900907	0.95[EUR][1000 genomes]
rs12909281	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs12909898	0.95[EUR][1000 genomes]
rs12911499	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs12912725	0.81[EUR][1000 genomes]
rs12914708	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs34039892	0.81[EUR][1000 genomes]
rs34053978	0.82[EUR][1000 genomes]
rs34184682	0.86[EUR][1000 genomes]
rs34292665	0.86[EUR][1000 genomes]
rs34508278	0.86[EUR][1000 genomes]
rs345796	1.00[YRI][hapmap];0.86[AFR][1000 genomes]
rs34718785	0.95[EUR][1000 genomes]
rs34747062	0.86[EUR][1000 genomes]
rs35158642	0.86[EUR][1000 genomes]
rs36094033	0.86[EUR][1000 genomes]
rs68165423	0.81[EUR][1000 genomes]
rs71462838	0.81[EUR][1000 genomes]
rs71462839	0.81[EUR][1000 genomes]
rs71462840	0.81[EUR][1000 genomes]
rs71462842	0.86[EUR][1000 genomes]
rs71462843	0.86[EUR][1000 genomes]
rs71462844	0.86[EUR][1000 genomes]
rs71462845	0.86[EUR][1000 genomes]
rs71462846	0.86[EUR][1000 genomes]
rs8042105	1.00[CEU][hapmap];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv903979	chr15:33144202-33550256	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1052966	chr15:33149753-33541951	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv542340	chr15:33149753-33541951	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
4	nsv903981	chr15:33207082-33550256	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
5	nsv568918	chr15:33244672-33446971	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv903982	chr15:33282844-33616150	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:33372600-33384200	Weak transcription	Brain Angular Gyrus	brain
2	chr15:33375800-33382200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr15:33376200-33382600	Weak transcription	Esophagus	oesophagus
4	chr15:33376600-33380600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr15:33376600-33381000	Weak transcription	Psoas Muscle	Psoas
6	chr15:33376800-33384600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr15:33376800-33384600	Weak transcription	NH-A	brain
8	chr15:33377200-33380600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr15:33377200-33384200	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr15:33379200-33380600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr15:33379200-33380800	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr15:33379200-33382200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr15:33379200-33382800	Weak transcription	Fetal Kidney	kidney
14	chr15:33379400-33380600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
15	chr15:33379400-33380600	Weak transcription	Skeletal Muscle Female	skeletal muscle
16	chr15:33379400-33381400	Weak transcription	Muscle Satellite Cultured Cells	--
17	chr15:33379400-33381400	Weak transcription	HSMMtube	muscle
18	chr15:33379400-33381400	Weak transcription	Osteobl	bone
19	chr15:33379400-33381600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr15:33379400-33381800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr15:33379400-33382000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr15:33379400-33382000	Weak transcription	HMEC	breast
23	chr15:33379400-33382000	Weak transcription	NHEK	skin
24	chr15:33379400-33382200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
25	chr15:33379400-33383200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
26	chr15:33379400-33384200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
27	chr15:33379400-33386200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr15:33379600-33380800	Weak transcription	Primary T helper cells PMA-I stimulated	--
29	chr15:33379600-33380800	Weak transcription	Primary T helper cells fromperipheralblood	blood
30	chr15:33379600-33380800	Weak transcription	NHLF	lung
31	chr15:33379600-33381000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
32	chr15:33379600-33381000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
33	chr15:33379600-33381200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr15:33379600-33381400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr15:33379600-33381400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
36	chr15:33379600-33381400	Weak transcription	NHDF-Ad	bronchial
37	chr15:33379600-33381800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr15:33379600-33382000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
39	chr15:33379600-33382000	Weak transcription	HSMM	muscle
40	chr15:33379600-33382400	Weak transcription	Fetal Thymus	thymus
41	chr15:33379800-33381000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
42	chr15:33379800-33381400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
43	chr15:33380000-33381000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
44	chr15:33380400-33381400	Weak transcription	Colonic Mucosa	Colon

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