Variant report
| Variant | rs34585985 |
|---|---|
| Chromosome Location | chr1:210489411-210489412 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:5)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:5 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr1:210488269..210490526-chr1:210500528..210502575,2 | MCF-7 | breast: | |
| 2 | chr1:210317209..210318789-chr1:210487022..210489666,2 | K562 | blood: | |
| 3 | chr1:210482264..210491242-chr1:210543149..210548547,8 | MCF-7 | breast: | |
| 4 | chr1:210487345..210489523-chr1:210545769..210547344,2 | MCF-7 | breast: | |
| 5 | chr1:210425601..210427456-chr1:210487995..210489554,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000200972 | Chromatin interaction |
| ENSG00000054392 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:7)
| rs_ID | r2[population] |
|---|---|
| rs10489390 | 1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap] |
| rs12067861 | 1.00[JPT][hapmap] |
| rs17708168 | 1.00[JPT][hapmap];0.89[AFR][1000 genomes] |
| rs17759116 | 0.81[GIH][hapmap];1.00[JPT][hapmap];1.00[MKK][hapmap] |
| rs1997783 | 1.00[JPT][hapmap] |
| rs4430327 | 1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs6667962 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1014034 | chr1:209759648-210501731 | Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 45 gene(s) | inside rSNPs | diseases |
| 2 | nsv8769 | chr1:210403509-210564588 | Enhancers Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 126 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
