Variant report

Variant	rs34586090
Chromosome Location	chr5:80261557-80261558
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:80257641..80260093-chr5:80260267..80261887,2	MCF-7	breast:

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10942936	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10942937	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12520354	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1900148	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs32984	1.00[ASN][1000 genomes]
rs34134330	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34550784	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67175576	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs888820	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs888821	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs960990	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024844	chr5:79862428-80860430	Weak transcription Strong transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv598747	chr5:79996632-80322712	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv1021784	chr5:80023679-80313586	ZNF genes & repeats Bivalent Enhancer Strong transcription Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv537787	chr5:80023679-80313586	Weak transcription Enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
5	nsv830358	chr5:80197105-80358920	Flanking Bivalent TSS/Enh Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:80255800-80261600	Active TSS	Brain Angular Gyrus	brain
2	chr5:80258000-80262400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
3	chr5:80258000-80263600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr5:80258000-80269000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr5:80259000-80262000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
6	chr5:80259000-80264000	Enhancers	Primary T helper cells fromperipheralblood	blood
7	chr5:80259600-80261600	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr5:80259600-80261800	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr5:80259600-80262600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
10	chr5:80260000-80261600	Enhancers	ES-I3 Cell Line	embryonic stem cell
11	chr5:80260000-80261600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr5:80260000-80263600	Weak transcription	Adipose Nuclei	Adipose
13	chr5:80260200-80263400	Weak transcription	Osteobl	bone
14	chr5:80260200-80264000	Enhancers	Primary T helper cells PMA-I stimulated	--
15	chr5:80260200-80264000	Weak transcription	Brain Anterior Caudate	brain
16	chr5:80260400-80263800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr5:80260600-80263200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr5:80260600-80263400	Enhancers	A549	lung
19	chr5:80260800-80261800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
20	chr5:80260800-80262200	Enhancers	NH-A	brain
21	chr5:80260800-80263400	Weak transcription	Cortex derived primary cultured neurospheres	brain
22	chr5:80260800-80263400	Weak transcription	Hela-S3	cervix
23	chr5:80260800-80263600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr5:80260800-80264600	Enhancers	HUVEC	blood vessel
25	chr5:80260800-80265800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
26	chr5:80261000-80262000	Enhancers	HUES48 Cell Line	embryonic stem cell
27	chr5:80261000-80263400	Weak transcription	HUES6 Cell Line	embryonic stem cell
28	chr5:80261000-80263400	Weak transcription	Muscle Satellite Cultured Cells	--
29	chr5:80261000-80263400	Weak transcription	Brain Substantia Nigra	brain
30	chr5:80261000-80263600	Weak transcription	H9 Cell Line	embryonic stem cell
31	chr5:80261000-80263600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
32	chr5:80261000-80263600	Weak transcription	Brain Hippocampus Middle	brain
33	chr5:80261000-80263600	Enhancers	NHDF-Ad	bronchial
34	chr5:80261000-80263800	Weak transcription	Brain Inferior Temporal Lobe	brain
35	chr5:80261000-80270200	Weak transcription	Right Atrium	heart
36	chr5:80261000-80270800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
37	chr5:80261200-80261600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr5:80261200-80263400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
39	chr5:80261200-80263400	Weak transcription	NHLF	lung
40	chr5:80261200-80263600	Enhancers	HepG2	liver
41	chr5:80261200-80263800	Weak transcription	Brain Cingulate Gyrus	brain

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