Variant report

Variant	rs34587221
Chromosome Location	chr3:100710714-100710715
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10936459	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10936460	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13066740	0.89[ASN][1000 genomes]
rs13075849	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13080505	0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13091963	0.87[ASN][1000 genomes]
rs1449305	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1449315	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16843113	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs16843116	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs16843163	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1965214	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2254374	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2595914	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2595917	0.88[ASN][1000 genomes]
rs2713768	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2713769	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2713771	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2713773	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2713774	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2713775	0.88[ASN][1000 genomes]
rs2713776	0.88[ASN][1000 genomes]
rs28365990	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34350012	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34670326	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34748077	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35064087	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35290466	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3732895	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3732896	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3806655	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs41273569	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4928060	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs56847573	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs58004340	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931417	chr3:100547347-101183844	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	esv2757881	chr3:100613387-100776497	Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	esv2759163	chr3:100613387-100776497	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:100692600-100711200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr3:100700400-100711200	Weak transcription	Esophagus	oesophagus
3	chr3:100701800-100711000	Weak transcription	Aorta	Aorta
4	chr3:100702000-100710800	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr3:100702200-100711000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr3:100707200-100711200	Weak transcription	Gastric	stomach
7	chr3:100707200-100711200	Weak transcription	Lung	lung
8	chr3:100708600-100711000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr3:100709000-100712600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr3:100709200-100713000	Active TSS	Stomach Smooth Muscle	stomach
11	chr3:100709600-100711600	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr3:100709600-100712400	Active TSS	HSMMtube	muscle
13	chr3:100709800-100711600	Active TSS	Osteobl	bone
14	chr3:100709800-100712400	Active TSS	Fetal Muscle Leg	muscle
15	chr3:100709800-100712400	Active TSS	NHDF-Ad	bronchial
16	chr3:100709800-100712600	Active TSS	Muscle Satellite Cultured Cells	--
17	chr3:100709800-100712600	Active TSS	Fetal Stomach	stomach
18	chr3:100710000-100710800	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr3:100710000-100712800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr3:100710000-100712800	Active TSS	Fetal Lung	lung
21	chr3:100710200-100710800	Flanking Active TSS	HUVEC	blood vessel
22	chr3:100710200-100712200	Active TSS	Right Atrium	heart
23	chr3:100710200-100712400	Active TSS	Duodenum Smooth Muscle	Duodenum
24	chr3:100710200-100712600	Active TSS	Fetal Muscle Trunk	muscle
25	chr3:100710400-100711000	Weak transcription	HSMM	muscle
26	chr3:100710400-100712400	Active TSS	Colon Smooth Muscle	Colon
27	chr3:100710400-100712400	Active TSS	NHLF	lung
28	chr3:100710400-100712800	Active TSS	Rectal Smooth Muscle	rectum
29	chr3:100710600-100710800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr3:100710600-100710800	Enhancers	Rectal Mucosa Donor 31	rectum
31	chr3:100710600-100711000	Enhancers	NHEK	skin
32	chr3:100710600-100711600	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr3:100710600-100712400	Active TSS	Ovary	ovary
34	chr3:100710600-100712400	Active TSS	Rectal Mucosa Donor 29	rectum
35	chr3:100710600-100712600	Active TSS	Fetal Intestine Large	intestine

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