Variant report

Variant	rs34593241
Chromosome Location	chr4:54543552-54543553
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1351055	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1351056	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1477879	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2199572	0.94[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs2199573	0.94[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs2199574	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs28605511	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4864815	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829936	chr4:54367783-54556123	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv3449865	chr4:54541828-54543952	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:54542200-54543600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr4:54542200-54543600	Enhancers	Muscle Satellite Cultured Cells	--
3	chr4:54542200-54543800	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr4:54542200-54543800	Enhancers	Primary hematopoietic stem cells short term culture	blood
5	chr4:54542800-54543600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr4:54543000-54543600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr4:54543200-54543600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr4:54543200-54547800	Weak transcription	NHDF-Ad	bronchial
9	chr4:54543200-54550400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr4:54543400-54543800	Enhancers	Monocytes-CD14+_RO01746	blood
11	chr4:54543400-54545000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr4:54543400-54547600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr4:54543400-54548000	Weak transcription	Osteobl	bone

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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