Variant report
| Variant | rs34595979 |
|---|---|
| Chromosome Location | chr1:104721538-104721539 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:20)
| rs_ID | r2[population] |
|---|---|
| rs12060680 | 0.89[EUR][1000 genomes] |
| rs12062742 | 0.89[EUR][1000 genomes] |
| rs12091885 | 0.89[EUR][1000 genomes] |
| rs12722914 | 0.86[AFR][1000 genomes];0.89[EUR][1000 genomes] |
| rs12728437 | 0.88[AFR][1000 genomes];0.89[EUR][1000 genomes] |
| rs17019095 | 0.88[AFR][1000 genomes];0.89[EUR][1000 genomes] |
| rs1932472 | 0.88[AFR][1000 genomes];0.89[EUR][1000 genomes] |
| rs34176652 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs34193787 | 0.83[AFR][1000 genomes];0.89[EUR][1000 genomes] |
| rs34948529 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs34957040 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs35638527 | 0.83[AFR][1000 genomes];0.89[EUR][1000 genomes] |
| rs6661610 | 1.00[AMR][1000 genomes] |
| rs67811026 | 0.89[EUR][1000 genomes] |
| rs67883107 | 0.89[EUR][1000 genomes] |
| rs71655845 | 0.89[EUR][1000 genomes] |
| rs71669408 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs71669409 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs71669412 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs72989543 | 0.89[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1014507 | chr1:104307231-104784753 | Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 2 | nsv1012931 | chr1:104322484-104778961 | Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 3 | nsv872072 | chr1:104470622-105076810 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 4 | nsv1010903 | chr1:104483363-105468941 | Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 5 | nsv482341 | chr1:104589525-104731812 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr1:104715400-104723800 | Weak transcription | ES-UCSF4 Cell Line | embryonic stem cell |
| 2 | chr1:104721200-104723800 | Weak transcription | iPS-18 Cell Line | embryonic stem cell |
