Variant report

Variant	rs34604979
Chromosome Location	chr15:43249783-43249784
allele	-/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:43234809..43237372-chr15:43248299..43250757,2	K562	blood:
2	chr15:43234709..43237589-chr15:43247590..43250522,2	MCF-7	breast:
3	chr15:43242538..43245839-chr15:43247604..43251014,3	K562	blood:

Variant related genes	Relation type
ENSG00000159459	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050128	chr15:43056145-43262736	Active TSS Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv542368	chr15:43056145-43262736	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv525461	chr15:43062548-43482127	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
4	nsv904134	chr15:43097652-43357406	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv1044522	chr15:43115348-43658417	Strong transcription Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
6	nsv515876	chr15:43116906-43445305	Strong transcription Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
7	nsv904135	chr15:43143998-43392075	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
8	nsv1036512	chr15:43164906-43274531	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
9	nsv569239	chr15:43201109-43392075	Strong transcription Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
10	nsv569240	chr15:43201109-43445305	Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Enhancers Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
11	nsv569241	chr15:43201109-43522922	Active TSS Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
12	nsv1039587	chr15:43204351-43378274	Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
13	nsv569242	chr15:43210030-43445305	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
14	nsv1050987	chr15:43237103-43385515	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
15	nsv542369	chr15:43237103-43385515	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
16	esv3421859	chr15:43249285-43280570	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:43232000-43362800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr15:43235400-43252600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr15:43236000-43268400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr15:43237800-43254800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
5	chr15:43240400-43252000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr15:43241200-43251000	Strong transcription	Fetal Lung	lung
7	chr15:43241200-43269800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr15:43241600-43251800	Strong transcription	Fetal Stomach	stomach
9	chr15:43241600-43258600	Strong transcription	Stomach Smooth Muscle	stomach
10	chr15:43241600-43258800	Strong transcription	Placenta	Placenta
11	chr15:43241600-43259200	Strong transcription	Fetal Muscle Trunk	muscle
12	chr15:43241600-43259800	Strong transcription	Monocytes-CD14+_RO01746	blood
13	chr15:43241600-43261800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr15:43241600-43271000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
15	chr15:43241600-43271800	Strong transcription	Primary T helper cells fromperipheralblood	blood
16	chr15:43241800-43250000	Strong transcription	Fetal Thymus	thymus
17	chr15:43241800-43251000	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
18	chr15:43241800-43254000	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr15:43241800-43254400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
20	chr15:43241800-43257600	Strong transcription	Fetal Brain Female	brain
21	chr15:43241800-43258800	Strong transcription	Adipose Nuclei	Adipose
22	chr15:43241800-43258800	Strong transcription	Fetal Intestine Large	intestine
23	chr15:43241800-43259400	Strong transcription	Primary monocytes fromperipheralblood	blood
24	chr15:43241800-43270800	Strong transcription	Primary T cells fromperipheralblood	blood
25	chr15:43242000-43254800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr15:43242000-43258800	Strong transcription	Primary neutrophils fromperipheralblood	blood
27	chr15:43242200-43250600	Strong transcription	Brain Hippocampus Middle	brain
28	chr15:43242200-43253000	Strong transcription	Brain Anterior Caudate	brain
29	chr15:43242200-43253400	Strong transcription	Rectal Mucosa Donor 29	rectum
30	chr15:43242200-43258600	Strong transcription	HUES48 Cell Line	embryonic stem cell
31	chr15:43242200-43258800	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
32	chr15:43242200-43258800	Strong transcription	Duodenum Mucosa	Duodenum
33	chr15:43242200-43259000	Strong transcription	Duodenum Smooth Muscle	Duodenum
34	chr15:43242200-43259400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
35	chr15:43242200-43270800	Strong transcription	Primary T helper cells PMA-I stimulated	--
36	chr15:43242400-43259000	Strong transcription	Primary B cells from peripheral blood	blood
37	chr15:43242800-43262600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr15:43243200-43256200	Weak transcription	Fetal Heart	heart
39	chr15:43243600-43253000	Strong transcription	Primary B cells from cord blood	blood
40	chr15:43243800-43265000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr15:43244000-43276400	Weak transcription	Psoas Muscle	Psoas
42	chr15:43244400-43251000	Strong transcription	GM12878-XiMat	blood
43	chr15:43244600-43249800	Weak transcription	Pancreas	Pancrea
44	chr15:43244600-43254600	Weak transcription	Small Intestine	intestine
45	chr15:43244600-43266200	Weak transcription	Gastric	stomach
46	chr15:43244800-43251800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
47	chr15:43245000-43252000	Weak transcription	Rectal Smooth Muscle	rectum
48	chr15:43245600-43252600	Weak transcription	Fetal Brain Male	brain
49	chr15:43246000-43252000	Weak transcription	Placenta Amnion	Placenta Amnion
50	chr15:43246000-43252600	Weak transcription	Right Ventricle	heart

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