Variant report

Variant	rs34610097
Chromosome Location	chr15:30013959-30013960
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs12898678	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs12901683	1.00[AFR][1000 genomes]
rs12911714	1.00[AFR][1000 genomes]
rs12913280	1.00[AFR][1000 genomes]
rs17571101	1.00[AFR][1000 genomes]
rs34466258	1.00[AFR][1000 genomes]
rs34968193	1.00[AFR][1000 genomes]
rs35230608	1.00[AFR][1000 genomes]
rs4371108	1.00[AFR][1000 genomes]
rs71470921	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv456736	chr15:29327352-30208654	Weak transcription Active TSS Enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv568675	chr15:29327352-30208654	Flanking Active TSS Strong transcription Active TSS Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv995038	chr15:29744279-30366124	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
4	nsv1038495	chr15:29825859-30351687	Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
5	nsv542293	chr15:29825859-30351687	Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
6	nsv832944	chr15:29861062-30082057	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
7	nsv832945	chr15:29932599-30123721	Genic enhancers Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
8	esv2422463	chr15:30003189-30215336	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:97 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:29989000-30014800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr15:29989600-30021200	Strong transcription	Duodenum Smooth Muscle	Duodenum
3	chr15:29989600-30027200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr15:29990000-30014200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr15:29990000-30016600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr15:29990200-30016200	Strong transcription	Left Ventricle	heart
7	chr15:29990200-30028400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr15:29990400-30014200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
9	chr15:29990400-30014400	Strong transcription	Fetal Muscle Trunk	muscle
10	chr15:29990400-30014400	Strong transcription	Placenta	Placenta
11	chr15:29990400-30026400	Strong transcription	Stomach Smooth Muscle	stomach
12	chr15:29990600-30014200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
13	chr15:29990800-30014400	Strong transcription	HUES48 Cell Line	embryonic stem cell
14	chr15:29991000-30014200	Strong transcription	HUES6 Cell Line	embryonic stem cell
15	chr15:29991200-30014200	Strong transcription	HUES64 Cell Line	embryonic stem cell
16	chr15:29991200-30014400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
17	chr15:29991200-30014400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr15:29991200-30014600	Strong transcription	Osteobl	bone
19	chr15:29991200-30020200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr15:29991200-30022400	Strong transcription	Skeletal Muscle Female	skeletal muscle
21	chr15:29991600-30014400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr15:29992000-30026600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
23	chr15:29992200-30014800	Weak transcription	Small Intestine	intestine
24	chr15:29993200-30019600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr15:29995600-30014200	Strong transcription	Cortex derived primary cultured neurospheres	brain
26	chr15:29996000-30014400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr15:29996200-30021400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr15:29999200-30014200	Strong transcription	Brain Hippocampus Middle	brain
29	chr15:30004600-30014200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr15:30004600-30014400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr15:30004600-30014400	Strong transcription	Adipose Nuclei	Adipose
32	chr15:30004800-30014000	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
33	chr15:30005000-30014000	Strong transcription	Fetal Muscle Leg	muscle
34	chr15:30005000-30023000	Strong transcription	Muscle Satellite Cultured Cells	--
35	chr15:30005200-30014400	Strong transcription	Fetal Intestine Large	intestine
36	chr15:30005400-30022800	Strong transcription	HSMMtube	muscle
37	chr15:30006000-30014800	Strong transcription	Skeletal Muscle Male	skeletal muscle
38	chr15:30006200-30014000	Strong transcription	Fetal Lung	lung
39	chr15:30006600-30014400	Strong transcription	H1 Cell Line	embryonic stem cell
40	chr15:30006600-30014600	Strong transcription	HUVEC	blood vessel
41	chr15:30006800-30018200	Strong transcription	Colon Smooth Muscle	Colon
42	chr15:30007000-30014400	Strong transcription	Lung	lung
43	chr15:30007000-30014400	Strong transcription	Rectal Mucosa Donor 29	rectum
44	chr15:30007000-30014400	Strong transcription	Rectal Mucosa Donor 31	rectum
45	chr15:30007000-30015200	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
46	chr15:30007200-30014400	Strong transcription	Liver	Liver
47	chr15:30007200-30014400	Strong transcription	Brain Inferior Temporal Lobe	brain
48	chr15:30007200-30016600	Strong transcription	Right Ventricle	heart
49	chr15:30007200-30021400	Strong transcription	Fetal Kidney	kidney
50	chr15:30007200-30021400	Strong transcription	NHLF	lung

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