Variant report
| Variant | rs346194 |
|---|---|
| Chromosome Location | chr18:40037616-40037617 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-PIK3C3-5 | chr18:40037228-40039640 | ENSG00000267586.2 |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:30)
| rs_ID | r2[population] |
|---|---|
| rs1431834 | 0.83[EUR][1000 genomes] |
| rs168300 | 0.88[EUR][1000 genomes] |
| rs237970 | 0.83[EUR][1000 genomes] |
| rs346182 | 0.81[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs346183 | 0.83[EUR][1000 genomes] |
| rs346184 | 0.83[EUR][1000 genomes] |
| rs346185 | 0.88[EUR][1000 genomes] |
| rs346186 | 0.88[EUR][1000 genomes] |
| rs346187 | 0.88[EUR][1000 genomes] |
| rs346188 | 0.88[EUR][1000 genomes] |
| rs346189 | 0.88[EUR][1000 genomes] |
| rs346190 | 0.83[EUR][1000 genomes] |
| rs346191 | 0.88[EUR][1000 genomes] |
| rs346192 | 0.83[EUR][1000 genomes] |
| rs346193 | 0.87[EUR][1000 genomes] |
| rs346196 | 0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs346197 | 0.82[EUR][1000 genomes] |
| rs346212 | 0.88[EUR][1000 genomes] |
| rs346213 | 0.88[EUR][1000 genomes] |
| rs346214 | 0.81[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs346215 | 0.81[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs346217 | 0.91[EUR][1000 genomes] |
| rs346218 | 0.84[EUR][1000 genomes] |
| rs346222 | 0.88[EUR][1000 genomes] |
| rs346223 | 0.88[EUR][1000 genomes] |
| rs346224 | 0.83[EUR][1000 genomes] |
| rs346225 | 0.83[EUR][1000 genomes] |
| rs400064 | 0.83[EUR][1000 genomes] |
| rs441362 | 0.82[EUR][1000 genomes] |
| rs971293 | 0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv949609 | chr18:39126941-40070286 | Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 11 gene(s) | inside rSNPs | diseases |
| 2 | nsv1059409 | chr18:39711099-40139446 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 3 | nsv909572 | chr18:39938510-40064000 | Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr18:40026200-40040000 | Weak transcription | hESC Derived CD56+ Ectoderm Cultured Cells | ES cell derived |
