Variant report

Variant	rs34620158
Chromosome Location	chr1:223144490-223144491
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:223144142..223145952-chr1:223146468..223148708,2	K562	blood:
2	chr1:223139734..223142413-chr1:223144467..223146092,2	MCF-7	breast:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs11487819	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2378617	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2378618	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2378619	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2609359	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2609366	0.86[EUR][1000 genomes]
rs2609371	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2789910	0.85[AMR][1000 genomes]
rs2789924	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2789929	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2789931	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2789933	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2789934	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2789937	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2789945	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2789953	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2789954	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2789957	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2789958	0.85[EUR][1000 genomes]
rs2789972	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs34188904	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs34673329	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4317816	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4509582	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4846783	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61837491	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs67420224	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs728006	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs946506	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999185	chr1:222500725-223278032	Strong transcription Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	nsv535304	chr1:222500725-223278032	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
3	nsv1012537	chr1:222755091-223512243	Weak transcription Strong transcription Enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
4	nsv1014896	chr1:223070446-223327185	Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv873207	chr1:223078802-223292632	Genic enhancers Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv917330	chr1:223141547-223225893	Enhancers Genic enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:223138200-223147000	Weak transcription	Colon Smooth Muscle	Colon
2	chr1:223140000-223147800	Weak transcription	Fetal Kidney	kidney
3	chr1:223142800-223145400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr1:223143200-223145400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr1:223143400-223144800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr1:223143400-223146200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr1:223143600-223145200	Enhancers	Rectal Smooth Muscle	rectum
8	chr1:223143600-223149200	Weak transcription	Right Atrium	heart
9	chr1:223143800-223148000	Weak transcription	Ovary	ovary
10	chr1:223143800-223148800	Weak transcription	Fetal Lung	lung
11	chr1:223144200-223165400	Weak transcription	Left Ventricle	heart

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