Variant report

Variant	rs34621807
Chromosome Location	chr20:23015633-23015634
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr20:23015624-23015674	HRE	kidney:	n/a
2	chr20:23015624-23015674	NHBE	bronchial:	n/a
3	chr20:23015624-23015674	MCF-7	breast:	n/a
4	chr20:23015624-23015674	SAEC	small airway:	n/a
5	chr20:23015624-23015674	A549	lung:	n/a
6	chr20:23015624-23015674	GM06990	blood:	n/a
7	chr20:23015624-23015674	SK-N-SH_RA	brain:	n/a
8	chr20:23015624-23015674	CMK	blood:	n/a
9	chr20:23015624-23015674	BE2_C	brain:	n/a
10	chr20:23015624-23015674	AG09319	gingival:	n/a
11	chr20:23015624-23015674	HepG2	liver:	n/a
12	chr20:23015624-23015674	PFSK-1	brain:	n/a
13	chr20:23015624-23015674	HCM	heart:	n/a
14	chr20:23015624-23015674	SK-N-SH	brain:	n/a
15	chr20:23015624-23015674	HCT-116	colon:	n/a
16	chr20:23015624-23015674	IMR90	lung:	fetal
17	chr20:23015624-23015674	ovcar-3	ovarian:	n/a
18	chr20:23015624-23015674	HAEpiC	amniotic membrane:	n/a
19	chr20:23015624-23015674	Hepatocyte	liver:	n/a
20	chr20:23015624-23015674	ProgFib	skin:	n/a
21	chr20:23015624-23015674	Hela-S3	cervix:	n/a
22	chr20:23015624-23015674	AG09309	skin:	n/a
23	chr20:23015624-23015674	NB4	blood:	n/a
24	chr20:23015624-23015674	SKMC	muscle:	n/a
25	chr20:23015624-23015674	SK-N-MC	brain:	n/a
26	chr20:23015624-23015674	T-47D	breast:	n/a
27	chr20:23015624-23015674	PrEC	prostate:	n/a
28	chr20:23015624-23015674	Jurkat	blood:	n/a
29	chr20:23015624-23015674	AG04449	skin:	fetal
30	chr20:23015624-23015674	LNCaP	prostate:	n/a
31	chr20:23015624-23015674	HNPCEpiC	eye:	n/a
32	chr20:23015624-23015674	MCF10A-Er-Src	breast:	n/a
33	chr20:23015624-23015674	HRCEpiC	kidney:	n/a
34	chr20:23015624-23015674	HRPEpiC	eye:	n/a
35	chr20:23015624-23015674	ECC-1	luminal epithelium:	n/a
36	chr20:23015624-23015674	HEK293	kidney:	embryo
37	chr20:23015624-23015674	HUVEC	blood vessel:	n/a
38	chr20:23015624-23015674	HCF	heart:	n/a
39	chr20:23015624-23015674	AG10803	skin:	n/a
40	chr20:23015624-23015674	HPAEpiC	pulmonary alveolar:	n/a
41	chr20:23015624-23015674	K562	blood:	n/a
42	chr20:23015624-23015674	AoSMC	blood vessel:	n/a
43	chr20:23015624-23015674	GM12891	blood:	n/a
44	chr20:23015624-23015674	NT2-D1	testis:	n/a
45	chr20:23015624-23015674	HMEC	breast:	n/a
46	chr20:23015624-23015674	BJ	skin:	n/a
47	chr20:23015624-23015674	AG04450	lung:	fetal
48	chr20:23015624-23015674	U87	brain:	n/a
49	chr20:23015624-23015674	Caco-2	colon:	n/a
50	chr20:23015624-23015674	HIPEpiC	eye:	n/a

No data

Variant related genes	Relation type
ENSG00000230492	CpG island
ENSG00000234646	CpG island
SSTR4	CpG island

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv912816	chr20:22757960-23062927	Flanking Active TSS Bivalent/Poised TSS Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv524981	chr20:23011468-23021597	Bivalent Enhancer Bivalent/Poised TSS Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	esv3400736	chr20:23014752-23018200	Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:23001000-23015800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr20:23013200-23016200	Weak transcription	Lung	lung
3	chr20:23013200-23017400	Enhancers	Fetal Heart	heart
4	chr20:23014000-23015800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr20:23014600-23016200	Weak transcription	Dnd41	blood
6	chr20:23015200-23015800	Weak transcription	Spleen	Spleen
7	chr20:23015400-23015800	Bivalent Enhancer	Fetal Muscle Trunk	muscle
8	chr20:23015400-23016000	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr20:23015400-23016200	Bivalent/Poised TSS	ES-UCSF4 Cell Line	embryonic stem cell
10	chr20:23015400-23016600	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
11	chr20:23015600-23015800	Flanking Bivalent TSS/Enh	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr20:23015600-23015800	Flanking Bivalent TSS/Enh	Brain Germinal Matrix	brain
13	chr20:23015600-23016000	Enhancers	Primary hematopoietic stem cells	blood
14	chr20:23015600-23016000	Bivalent/Poised TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr20:23015600-23016000	Active TSS	Right Ventricle	heart
16	chr20:23015600-23016400	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
17	chr20:23015600-23016400	Bivalent/Poised TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr20:23015600-23016400	Bivalent Enhancer	Fetal Brain Male	brain
19	chr20:23015600-23016600	Bivalent Enhancer	Fetal Muscle Leg	muscle

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