Variant report

Variant	rs34622269
Chromosome Location	chr6:106549916-106549917
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:106549886..106552780-chr6:106576798..106578575,2	MCF-7	breast:
2	chr6:106548314..106551554-chr6:106556106..106558201,3	K562	blood:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs10499050	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932155	chr6:106281728-107030467	Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv1025231	chr6:106451012-106634389	Enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv830755	chr6:106461705-106624202	Weak transcription Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
4	nsv1025900	chr6:106529777-106898421	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
5	nsv1018270	chr6:106531658-106908606	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
6	nsv538399	chr6:106531658-106908606	Flanking Active TSS Active TSS Enhancers Strong transcription Genic enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
7	esv1832544	chr6:106539914-106642993	Enhancers Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:87 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:106544800-106551200	Genic enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr6:106545400-106551000	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr6:106546600-106551200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr6:106546600-106559000	Weak transcription	Colon Smooth Muscle	Colon
5	chr6:106546800-106551000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr6:106546800-106551000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr6:106546800-106551200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr6:106546800-106551400	Weak transcription	Dnd41	blood
9	chr6:106546800-106552800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr6:106546800-106560200	Weak transcription	HSMM	muscle
11	chr6:106546800-106567000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr6:106547000-106551200	Weak transcription	Primary monocytes fromperipheralblood	blood
13	chr6:106547000-106552000	Transcr. at gene 5' and 3'	Primary T helper 17 cells PMA-I stimulated	--
14	chr6:106547200-106550200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
15	chr6:106547200-106551200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr6:106547200-106551200	Weak transcription	Brain Hippocampus Middle	brain
17	chr6:106547200-106551400	Weak transcription	Primary hematopoietic stem cells	blood
18	chr6:106547200-106551400	Weak transcription	Skeletal Muscle Female	skeletal muscle
19	chr6:106547200-106562600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr6:106547400-106551000	Weak transcription	Monocytes-CD14+_RO01746	blood
21	chr6:106547400-106551000	Weak transcription	Osteobl	bone
22	chr6:106547400-106551400	Weak transcription	Gastric	stomach
23	chr6:106547400-106551400	Weak transcription	Pancreas	Pancrea
24	chr6:106547400-106552800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr6:106547400-106552800	Weak transcription	Placenta	Placenta
26	chr6:106547400-106553000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr6:106547400-106557200	Strong transcription	Fetal Intestine Large	intestine
28	chr6:106547400-106558200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
29	chr6:106547400-106560200	Weak transcription	NH-A	brain
30	chr6:106547600-106550800	Weak transcription	HUES6 Cell Line	embryonic stem cell
31	chr6:106547600-106551000	Weak transcription	Primary T cells from cord blood	blood
32	chr6:106547600-106551000	Weak transcription	Brain Anterior Caudate	brain
33	chr6:106547600-106551000	Weak transcription	Ovary	ovary
34	chr6:106547600-106551000	Active TSS	Rectal Mucosa Donor 29	rectum
35	chr6:106547600-106556400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr6:106547800-106551000	Active TSS	Duodenum Mucosa	Duodenum
37	chr6:106547800-106552600	Weak transcription	Primary neutrophils fromperipheralblood	blood
38	chr6:106548000-106550800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
39	chr6:106548000-106551000	Weak transcription	Duodenum Smooth Muscle	Duodenum
40	chr6:106548000-106552800	Transcr. at gene 5' and 3'	Primary T helper cells PMA-I stimulated	--
41	chr6:106548000-106553200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr6:106548000-106556600	Weak transcription	HUES64 Cell Line	embryonic stem cell
43	chr6:106548200-106551000	Weak transcription	NHLF	lung
44	chr6:106548200-106551400	Weak transcription	Muscle Satellite Cultured Cells	--
45	chr6:106548400-106552000	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
46	chr6:106548400-106561800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
47	chr6:106548600-106550200	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
48	chr6:106548600-106551200	Weak transcription	NHDF-Ad	bronchial
49	chr6:106548600-106551800	Genic enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
50	chr6:106548800-106550000	Enhancers	Hela-S3	cervix

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