Variant report

Variant	rs34623444
Chromosome Location	chr11:67964692-67964693
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:67952322..67955302-chr11:67963551..67965315,2	MCF-7	breast:
2	chr11:67962638..67965492-chr12:18617187..18619387,2	MCF-7	breast:
3	chr11:67963326..67966969-chr11:67979861..67981845,4	MCF-7	breast:
4	chr11:67964550..67967005-chr17:57101998..57104396,2	MCF-7	breast:
5	chr11:67959659..67962124-chr11:67963564..67966188,3	K562	blood:
6	chr11:67963420..67968782-chr11:67971477..67978246,6	MCF-7	breast:
7	chr11:67960474..67961987-chr11:67963561..67966188,2	K562	blood:
8	chr11:67958631..67961595-chr11:67962139..67966339,8	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000110066	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs12785373	1.00[AFR][1000 genomes]
rs1636211	1.00[AFR][1000 genomes]
rs67569920	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv825963	chr11:67763676-68197054	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	149 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:105 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:67915000-67973800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr11:67947400-67971200	Weak transcription	Fetal Kidney	kidney
3	chr11:67947400-67971400	Weak transcription	Spleen	Spleen
4	chr11:67952200-67968000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr11:67952400-67968000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr11:67952600-67977000	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr11:67953000-67976800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr11:67953400-67967800	Weak transcription	NHDF-Ad	bronchial
9	chr11:67953600-67967600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr11:67953800-67978600	Weak transcription	Aorta	Aorta
11	chr11:67954000-67976200	Weak transcription	Placenta	Placenta
12	chr11:67954200-67966800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr11:67954200-67967600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr11:67954200-67976800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr11:67954400-67968200	Weak transcription	NH-A	brain
16	chr11:67954400-67976800	Weak transcription	H9 Cell Line	embryonic stem cell
17	chr11:67954600-67968200	Weak transcription	Dnd41	blood
18	chr11:67954600-67971200	Weak transcription	Brain Germinal Matrix	brain
19	chr11:67954600-67976600	Weak transcription	Thymus	Thymus
20	chr11:67956400-67966000	Weak transcription	Fetal Intestine Small	intestine
21	chr11:67956400-67978600	Weak transcription	Fetal Muscle Trunk	muscle
22	chr11:67956600-67966600	Weak transcription	Fetal Intestine Large	intestine
23	chr11:67956600-67966800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr11:67956600-67967200	Weak transcription	Fetal Muscle Leg	muscle
25	chr11:67956600-67968200	Weak transcription	HUES6 Cell Line	embryonic stem cell
26	chr11:67956600-67969800	Weak transcription	Hela-S3	cervix
27	chr11:67956800-67971600	Weak transcription	Fetal Thymus	thymus
28	chr11:67957000-67968000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr11:67957000-67968400	Weak transcription	Fetal Brain Female	brain
30	chr11:67957000-67973400	Weak transcription	Primary neutrophils fromperipheralblood	blood
31	chr11:67957000-67973600	Weak transcription	Monocytes-CD14+_RO01746	blood
32	chr11:67957400-67966200	Weak transcription	Primary B cells from cord blood	blood
33	chr11:67957600-67967800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr11:67957600-67973400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr11:67957600-67976200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
36	chr11:67957600-67976400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
37	chr11:67957800-67971600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
38	chr11:67958000-67966800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr11:67958400-67965600	Weak transcription	Esophagus	oesophagus
40	chr11:67958400-67967600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
41	chr11:67958600-67966000	Weak transcription	Adipose Nuclei	Adipose
42	chr11:67958600-67973800	Weak transcription	Fetal Stomach	stomach
43	chr11:67959000-67965600	Weak transcription	Lung	lung
44	chr11:67959000-67972600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
45	chr11:67959200-67976400	Enhancers	Primary T helper cells PMA-I stimulated	--
46	chr11:67959600-67974400	Enhancers	Primary T helper cells fromperipheralblood	blood
47	chr11:67959800-67965800	Weak transcription	Ovary	ovary
48	chr11:67959800-67965800	Weak transcription	NHEK	skin
49	chr11:67959800-67966000	Weak transcription	Right Ventricle	heart
50	chr11:67959800-67967800	Weak transcription	Stomach Smooth Muscle	stomach

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