Variant report

Variant	rs34623699
Chromosome Location	chr12:123220416-123220417
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs12810864	0.80[EUR][1000 genomes]
rs33930522	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899571	chr12:123215734-123363562	Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs34623699	CDK2AP1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:123219000-123222000	Weak transcription	Primary hematopoietic stem cells	blood
2	chr12:123219000-123222200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr12:123219000-123222600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr12:123219000-123222800	Weak transcription	Primary neutrophils fromperipheralblood	blood
5	chr12:123219000-123222800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr12:123220000-123222200	Weak transcription	K562	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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