Variant report

Variant	rs34623832
Chromosome Location	chr2:213248125-213248126
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10165393	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10176489	0.89[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs10186360	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10186462	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10186519	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10186681	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10189506	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10201724	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10211056	0.89[AFR][1000 genomes];0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs10497971	0.89[AFR][1000 genomes];0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs11682488	0.93[ASN][1000 genomes]
rs12104818	0.93[ASN][1000 genomes]
rs12104831	0.93[ASN][1000 genomes]
rs12694278	0.89[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs12994366	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12994616	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12998688	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13004266	0.99[EUR][1000 genomes]
rs13014726	0.89[AFR][1000 genomes];0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs13015805	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13016456	0.83[EUR][1000 genomes]
rs13016554	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13027907	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13030181	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13031888	0.89[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs13034755	0.82[EUR][1000 genomes]
rs1394800	0.84[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs1505351	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1505352	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1505375	0.95[AFR][1000 genomes];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs16848535	0.80[ASN][1000 genomes]
rs16848540	0.80[ASN][1000 genomes]
rs1876047	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2013073	0.89[AFR][1000 genomes];0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs28510380	0.98[AFR][1000 genomes];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs34777887	0.98[AFR][1000 genomes];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs35880620	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4465721	0.89[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs55778914	0.80[ASN][1000 genomes]
rs62184103	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73987400	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1006051	chr2:213052804-213273642	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv584346	chr2:213067749-213258622	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv834527	chr2:213115966-213334308	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1014680	chr2:213142147-213301614	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
5	nsv1004573	chr2:213186537-213365252	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
6	nsv875811	chr2:213200920-213347104	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
7	nsv3149	chr2:213204282-213248966	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv584422	chr2:213214303-213270427	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv1003694	chr2:213216431-213290523	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv1009594	chr2:213246650-213275389	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
11	nsv1006281	chr2:213246650-213279954	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:213243400-213248400	Weak transcription	Fetal Heart	heart
2	chr2:213247600-213248200	Weak transcription	Fetal Kidney	kidney
3	chr2:213247600-213249400	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr2:213247800-213248600	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr2:213248000-213249200	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr2:213248000-213250000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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