Variant report

Variant	rs34628274
Chromosome Location	chr5:179348942-179348943
allele	-/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv883270	chr5:178951106-179350387	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	312 gene(s)	inside rSNPs	diseases
2	nsv531997	chr5:179107599-179588082	Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	339 gene(s)	inside rSNPs	diseases
3	nsv469579	chr5:179184831-179360191	Genic enhancers Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	182 gene(s)	inside rSNPs	diseases
4	nsv883277	chr5:179193598-179350387	Genic enhancers Enhancers Weak transcription Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	182 gene(s)	inside rSNPs	diseases
5	nsv1030437	chr5:179235423-179649944	Enhancers Strong transcription Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	189 gene(s)	inside rSNPs	diseases
6	nsv537982	chr5:179235423-179649944	Active TSS Weak transcription Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	189 gene(s)	inside rSNPs	diseases
7	nsv948909	chr5:179249099-179772640	Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	175 gene(s)	inside rSNPs	diseases
8	esv3470836	chr5:179348549-179349356	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
9	esv3470837	chr5:179348549-179349356	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
10	esv3451041	chr5:179348763-179349277	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:179335800-179358200	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr5:179336000-179349000	Weak transcription	Brain Cingulate Gyrus	brain
3	chr5:179336000-179361000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr5:179344600-179381600	Weak transcription	Fetal Brain Male	brain
5	chr5:179344800-179350400	Weak transcription	Primary B cells from cord blood	blood
6	chr5:179344800-179350400	Weak transcription	Monocytes-CD14+_RO01746	blood
7	chr5:179344800-179351400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr5:179345000-179350200	Weak transcription	Primary monocytes fromperipheralblood	blood
9	chr5:179345000-179350400	Weak transcription	Primary neutrophils fromperipheralblood	blood
10	chr5:179346800-179353800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr5:179347000-179349200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr5:179347000-179350400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
13	chr5:179347000-179353800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr5:179347200-179349000	Weak transcription	Fetal Stomach	stomach
15	chr5:179347200-179381000	Weak transcription	Brain Angular Gyrus	brain
16	chr5:179347400-179358200	Weak transcription	Brain Hippocampus Middle	brain
17	chr5:179347400-179372000	Weak transcription	Brain Germinal Matrix	brain
18	chr5:179347600-179352800	Weak transcription	Fetal Brain Female	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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