Variant report

Variant	rs34638589
Chromosome Location	chr17:17302137-17302138
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:17299943..17302220-chr17:17305018..17306768,2	K562	blood:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs12949004	1.00[ASN][1000 genomes]
rs34955670	1.00[ASN][1000 genomes]
rs58286657	1.00[ASN][1000 genomes]
rs71364024	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833382	chr17:17124329-17305683	Genic enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv1061186	chr17:17200427-17314406	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:17296000-17304600	Weak transcription	Gastric	stomach
2	chr17:17296400-17305600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr17:17296600-17305600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
4	chr17:17296600-17305800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
5	chr17:17296600-17306200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr17:17297200-17306600	Enhancers	Dnd41	blood
7	chr17:17298600-17306800	Enhancers	Fetal Thymus	thymus
8	chr17:17299200-17305800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr17:17299600-17304600	Weak transcription	Pancreas	Pancrea
10	chr17:17299800-17310400	Enhancers	Primary hematopoietic stem cells	blood
11	chr17:17300200-17306800	Enhancers	Primary hematopoietic stem cells short term culture	blood
12	chr17:17300200-17306800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr17:17300600-17302200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr17:17301200-17303200	Enhancers	Fetal Muscle Trunk	muscle
15	chr17:17301200-17303200	Enhancers	Fetal Muscle Leg	muscle
16	chr17:17301400-17302200	Enhancers	HepG2	liver
17	chr17:17301400-17302400	Enhancers	Primary T helper cells fromperipheralblood	blood
18	chr17:17301400-17302400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr17:17301400-17302400	Enhancers	Fetal Lung	lung
20	chr17:17301400-17302600	Enhancers	Hela-S3	cervix
21	chr17:17301400-17303000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr17:17301400-17303200	Enhancers	Placenta	Placenta
23	chr17:17301400-17303200	Enhancers	Lung	lung
24	chr17:17301400-17304000	Enhancers	Primary T cells from cord blood	blood
25	chr17:17301400-17306400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr17:17301400-17307000	Enhancers	Primary T cells fromperipheralblood	blood
27	chr17:17301400-17307000	Enhancers	Primary T helper cells PMA-I stimulated	--
28	chr17:17301600-17302200	Enhancers	Primary T helper naive cells from peripheral blood	blood
29	chr17:17301600-17302200	Enhancers	Brain Anterior Caudate	brain
30	chr17:17301600-17302400	Enhancers	Cortex derived primary cultured neurospheres	brain
31	chr17:17301600-17302800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr17:17301600-17302800	Enhancers	Skeletal Muscle Female	skeletal muscle
33	chr17:17301600-17302800	Enhancers	NHLF	lung
34	chr17:17301600-17303000	Enhancers	Primary B cells from cord blood	blood
35	chr17:17301600-17303000	Enhancers	Muscle Satellite Cultured Cells	--
36	chr17:17301600-17303000	Enhancers	Skeletal Muscle Male	skeletal muscle
37	chr17:17301600-17303200	Enhancers	Brain Germinal Matrix	brain
38	chr17:17301600-17303200	Enhancers	Osteobl	bone
39	chr17:17301600-17303600	Enhancers	Adipose Nuclei	Adipose
40	chr17:17301600-17306800	Enhancers	Thymus	Thymus
41	chr17:17301800-17302400	Enhancers	Fetal Stomach	stomach
42	chr17:17301800-17302400	Enhancers	NH-A	brain
43	chr17:17301800-17303000	Enhancers	Primary B cells from peripheral blood	blood
44	chr17:17301800-17303200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
45	chr17:17301800-17303800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
46	chr17:17301800-17305800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
47	chr17:17302000-17302200	Enhancers	NHDF-Ad	bronchial
48	chr17:17302000-17302400	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
49	chr17:17302000-17302400	Enhancers	Monocytes-CD14+_RO01746	blood
50	chr17:17302000-17302600	Weak transcription	Left Ventricle	heart

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