Variant report

Variant	rs34646774
Chromosome Location	chr4:103530769-103530770
allele	-/A
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:103421402..103423829-chr4:103529999..103532855,2	K562	blood:

Variant related genes	Relation type
ENSG00000109320	Chromatin interaction
ENSG00000260651	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830020	chr4:103387343-103581284	Strong transcription Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	esv3487344	chr4:103530272-103530842	Strong transcription Weak transcription Genic enhancers Enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	n/a
3	nsv1003618	chr4:103530465-103562161	Enhancers Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Active TSS	Chromatin interactive region miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:103483400-103541600	Weak transcription	K562	blood
2	chr4:103497600-103533400	Strong transcription	Primary B cells from peripheral blood	blood
3	chr4:103502600-103532800	Weak transcription	Brain Germinal Matrix	brain
4	chr4:103512800-103531800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
5	chr4:103513000-103542000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr4:103513200-103536200	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr4:103514600-103535800	Strong transcription	Adipose Nuclei	Adipose
8	chr4:103514600-103538200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr4:103514600-103539000	Strong transcription	Primary neutrophils fromperipheralblood	blood
10	chr4:103515000-103539000	Strong transcription	Monocytes-CD14+_RO01746	blood
11	chr4:103515200-103533200	Strong transcription	Primary B cells from cord blood	blood
12	chr4:103515200-103533400	Strong transcription	Primary hematopoietic stem cells	blood
13	chr4:103515200-103533600	Strong transcription	Duodenum Mucosa	Duodenum
14	chr4:103515200-103538800	Strong transcription	Primary monocytes fromperipheralblood	blood
15	chr4:103515400-103533200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr4:103515400-103533400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr4:103515400-103533400	Strong transcription	Rectal Mucosa Donor 29	rectum
18	chr4:103515400-103533600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
19	chr4:103515400-103538800	Strong transcription	Duodenum Smooth Muscle	Duodenum
20	chr4:103515400-103538800	Strong transcription	Skeletal Muscle Female	skeletal muscle
21	chr4:103515600-103533400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
22	chr4:103515600-103535600	Strong transcription	Fetal Muscle Trunk	muscle
23	chr4:103515800-103535800	Weak transcription	H9 Cell Line	embryonic stem cell
24	chr4:103515800-103538200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr4:103515800-103538800	Strong transcription	Rectal Mucosa Donor 31	rectum
26	chr4:103515800-103538800	Strong transcription	Rectal Smooth Muscle	rectum
27	chr4:103517600-103541600	Weak transcription	Right Atrium	heart
28	chr4:103517800-103536200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
29	chr4:103518400-103533200	Weak transcription	HUES6 Cell Line	embryonic stem cell
30	chr4:103520200-103535600	Strong transcription	Left Ventricle	heart
31	chr4:103520600-103531800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
32	chr4:103520800-103538600	Strong transcription	GM12878-XiMat	blood
33	chr4:103521000-103538800	Strong transcription	Placenta	Placenta
34	chr4:103521200-103537600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
35	chr4:103521400-103532600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
36	chr4:103521400-103554400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr4:103521800-103537400	Strong transcription	HSMM	muscle
38	chr4:103522400-103535600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
39	chr4:103523200-103531600	Strong transcription	Fetal Thymus	thymus
40	chr4:103523200-103538800	Strong transcription	Liver	Liver
41	chr4:103523800-103533200	Genic enhancers	Primary T killer naive cells fromperipheralblood	blood
42	chr4:103524600-103532600	Genic enhancers	Primary T helper cells PMA-I stimulated	--
43	chr4:103524600-103533600	Strong transcription	Fetal Lung	lung
44	chr4:103524600-103538800	Strong transcription	Dnd41	blood
45	chr4:103525000-103532200	Weak transcription	Fetal Brain Male	brain
46	chr4:103525400-103530800	Strong transcription	Primary T cells from cord blood	blood
47	chr4:103525400-103537200	Strong transcription	Colon Smooth Muscle	Colon
48	chr4:103525600-103532800	Genic enhancers	Primary T helper 17 cells PMA-I stimulated	--
49	chr4:103525600-103536800	Strong transcription	HepG2	liver
50	chr4:103525800-103538800	Strong transcription	Sigmoid Colon	Sigmoid Colon

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