Variant report

Variant	rs34646865
Chromosome Location	chr6:37142017-37142018
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:37140365..37143420-chr6:37160123..37163963,3	MCF-7	breast:
2	chr6:36986660..36989321-chr6:37140588..37143469,2	K562	blood:
3	chr6:36986704..36989581-chr6:37141557..37144395,2	K562	blood:
4	chr12:54826068..54826922-chr6:37141901..37142869,2	Hela-S3	cervix:
5	chr6:37140835..37143675-chr6:37158995..37161367,4	K562	blood:
6	chr6:36990515..36993191-chr6:37140306..37142032,2	K562	blood:
7	chr6:36985904..36987716-chr6:37141908..37143451,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000146192	Chromatin interaction

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3385809	chr6:37141637-37142129	Transcr. at gene 5' and 3' Strong transcription Enhancers Genic enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37138000-37143200	Transcr. at gene 5' and 3'	Primary T regulatory cells fromperipheralblood	blood
2	chr6:37138200-37143400	Transcr. at gene 5' and 3'	Primary T helper 17 cells PMA-I stimulated	--
3	chr6:37138200-37143400	Transcr. at gene 5' and 3'	Dnd41	blood
4	chr6:37138200-37143800	Transcr. at gene 5' and 3'	Primary T helper naive cells fromperipheralblood	blood
5	chr6:37138200-37144000	Transcr. at gene 5' and 3'	Primary T helper cells PMA-I stimulated	--
6	chr6:37138600-37143600	Transcr. at gene 5' and 3'	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr6:37138600-37144400	Transcr. at gene 5' and 3'	Primary hematopoietic stem cells short term culture	blood
8	chr6:37138800-37142800	Transcr. at gene 5' and 3'	Primary neutrophils fromperipheralblood	blood
9	chr6:37138800-37144000	Transcr. at gene 5' and 3'	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr6:37138800-37145000	Transcr. at gene 5' and 3'	K562	blood
11	chr6:37139000-37143200	Transcr. at gene 5' and 3'	Primary T cells fromperipheralblood	blood
12	chr6:37139000-37143600	Transcr. at gene 5' and 3'	Primary T killer memory cells from peripheral blood	blood
13	chr6:37139800-37143200	Transcr. at gene 5' and 3'	Duodenum Smooth Muscle	Duodenum
14	chr6:37140000-37144000	Weak transcription	HSMM	muscle
15	chr6:37140200-37142400	Transcr. at gene 5' and 3'	HepG2	liver
16	chr6:37140200-37142600	Transcr. at gene 5' and 3'	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr6:37140200-37142600	Transcr. at gene 5' and 3'	Primary T killer naive cells fromperipheralblood	blood
18	chr6:37140200-37142600	Transcr. at gene 5' and 3'	Duodenum Mucosa	Duodenum
19	chr6:37140200-37143000	Transcr. at gene 5' and 3'	Esophagus	oesophagus
20	chr6:37140200-37143200	Transcr. at gene 5' and 3'	Primary mononuclear cells fromperipheralblood	Blood
21	chr6:37140200-37143600	Transcr. at gene 5' and 3'	Primary T cells effector/memory enriched fromperipheralblood	blood
22	chr6:37140200-37143600	Transcr. at gene 5' and 3'	Primary Natural Killer cells fromperipheralblood	blood
23	chr6:37140200-37143800	Transcr. at gene 5' and 3'	Primary T helper naive cells from peripheral blood	blood
24	chr6:37140400-37142600	Transcr. at gene 5' and 3'	Adipose Nuclei	Adipose
25	chr6:37140400-37142600	Strong transcription	Fetal Kidney	kidney
26	chr6:37140400-37142600	Transcr. at gene 5' and 3'	Rectal Mucosa Donor 29	rectum
27	chr6:37140400-37143000	Strong transcription	Aorta	Aorta
28	chr6:37140400-37143200	Strong transcription	H9 Cell Line	embryonic stem cell
29	chr6:37140400-37143200	Transcr. at gene 5' and 3'	Primary T cells from cord blood	blood
30	chr6:37140400-37143400	Genic enhancers	Primary B cells from peripheral blood	blood
31	chr6:37140400-37143400	Transcr. at gene 5' and 3'	Primary T helper memory cells from peripheral blood 2	blood
32	chr6:37140400-37143400	Transcr. at gene 5' and 3'	Primary T helper cells fromperipheralblood	blood
33	chr6:37140600-37142600	Genic enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr6:37140600-37142600	Genic enhancers	ES-UCSF4 Cell Line	embryonic stem cell
35	chr6:37140600-37142600	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
36	chr6:37140600-37142600	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
37	chr6:37140600-37142600	Genic enhancers	Brain Dorsolateral Prefrontal Cortex	brain
38	chr6:37140600-37142600	Genic enhancers	Colon Smooth Muscle	Colon
39	chr6:37140600-37142800	Strong transcription	HSMMtube	muscle
40	chr6:37140600-37143000	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
41	chr6:37140600-37143000	Transcr. at gene 5' and 3'	Primary T helper memory cells from peripheral blood 1	blood
42	chr6:37140600-37143000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
43	chr6:37140600-37143200	Strong transcription	Gastric	stomach
44	chr6:37140600-37143400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr6:37140600-37143600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr6:37140600-37143600	Genic enhancers	Primary monocytes fromperipheralblood	blood
47	chr6:37140600-37143600	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
48	chr6:37140600-37143600	Strong transcription	HUVEC	blood vessel
49	chr6:37140600-37143600	Strong transcription	NHEK	skin
50	chr6:37140600-37143600	Strong transcription	NHLF	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links