Variant report

No data

(count:21 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr8:91703897..91704427-chr8:91924931..91925718,2	MCF-7	breast:
2	chr8:91656035..91660624-chr8:91923601..91926897,6	MCF-7	breast:
3	chr8:91655180..91661938-chr8:91924192..91929884,17	MCF-7	breast:
4	chr8:91649829..91653898-chr8:91923286..91927799,5	MCF-7	breast:
5	chr8:91923652..91925326-chr8:92081669..92083962,2	MCF-7	breast:
6	chr8:91763941..91769111-chr8:91924081..91929908,10	MCF-7	breast:
7	chr8:91782138..91786093-chr8:91924944..91927174,4	MCF-7	breast:
8	chr8:91895496..91897971-chr8:91924630..91926928,4	MCF-7	breast:
9	chr8:91888393..91905767-chr8:91919159..91931807,48	MCF-7	breast:
10	chr8:91804614..91806911-chr8:91923508..91925621,2	MCF-7	breast:
11	chr8:91924135..91926221-chr8:91953944..91955666,2	MCF-7	breast:
12	chr8:91766235..91766940-chr8:91924900..91925737,2	MCF-7	breast:
13	chr8:91705691..91710257-chr8:91923411..91927074,5	MCF-7	breast:
14	chr8:91899173..91903204-chr8:91924216..91926667,4	MCF-7	breast:
15	chr8:91866002..91867663-chr8:91923726..91925814,2	MCF-7	breast:
16	chr8:91681989..91684010-chr8:91924151..91925843,2	MCF-7	breast:
17	chr8:91899525..91900565-chr8:91924750..91925617,3	MCF-7	breast:
18	chr8:91781643..91786719-chr8:91923582..91929024,8	MCF-7	breast:
19	chr8:91700595..91702835-chr8:91924612..91926709,2	MCF-7	breast:
20	chr8:91867431..91874888-chr8:91920306..91928900,17	MCF-7	breast:
21	chr8:91593640..91594279-chr8:91924795..91925446,2	MCF-7	breast:

No data

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs13248156	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35833328	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028628	chr8:91680968-92418954	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv539672	chr8:91680968-92418954	Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
3	nsv891185	chr8:91923776-92056288	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:91911600-91925800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr8:91911600-91926000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr8:91912600-91925200	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr8:91916400-91953000	Weak transcription	Aorta	Aorta
5	chr8:91923200-91925200	Weak transcription	Brain Cingulate Gyrus	brain
6	chr8:91923200-91925600	Weak transcription	Brain Hippocampus Middle	brain
7	chr8:91923200-91928000	Weak transcription	Left Ventricle	heart
8	chr8:91923800-91926800	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr8:91924000-91927000	Enhancers	Fetal Lung	lung
10	chr8:91924200-91926600	Enhancers	Brain Substantia Nigra	brain
11	chr8:91924200-91926800	Enhancers	Brain Angular Gyrus	brain
12	chr8:91924400-91926000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr8:91924600-91925000	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr8:91924600-91925000	Weak transcription	Fetal Stomach	stomach
15	chr8:91924800-91925000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
16	chr8:91924800-91925200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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