Variant report

Variant	rs34652362
Chromosome Location	chr2:10427073-10427074
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:15)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:15 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr2:10409349..10412124-chr2:10426501..10428444,2	MCF-7	breast:
2	chr2:10393383..10395595-chr2:10425523..10427994,2	MCF-7	breast:
3	chr2:10425999..10428311-chr2:10434515..10436938,2	MCF-7	breast:
4	chr2:10425416..10427502-chr2:10437383..10439645,2	K562	blood:
5	chr2:10424582..10428007-chr2:10430284..10432501,3	K562	blood:
6	chr2:10426724..10428299-chr2:10440170..10442093,2	K562	blood:
7	chr2:10418589..10420185-chr2:10425009..10427268,2	MCF-7	breast:
8	chr2:10425395..10428329-chr2:10430052..10432008,2	MCF-7	breast:
9	chr2:10328447..10328994-chr2:10426584..10427446,2	MCF-7	breast:
10	chr2:10404445..10406499-chr2:10426749..10428741,2	K562	blood:
11	chr2:10421994..10428607-chr2:10439137..10445249,17	MCF-7	breast:
12	chr2:10426763..10428609-chr2:10553195..10555162,2	MCF-7	breast:
13	chr2:10416195..10418762-chr2:10425700..10428798,3	MCF-7	breast:
14	chr2:10424760..10427362-chr2:10571844..10574068,2	MCF-7	breast:
15	chr2:10421389..10428688-chr2:10440606..10446723,13	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000206898	Chromatin interaction
ENSG00000115756	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10929653	0.93[ASN][1000 genomes]
rs13387140	0.97[ASN][1000 genomes]
rs62128508	0.84[ASN][1000 genomes]
rs72771662	0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530829	chr2:10357105-10655131	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	57 gene(s)	inside rSNPs	diseases
2	nsv873639	chr2:10372061-10475308	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:68 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:10421800-10429400	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr2:10422000-10427200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr2:10422200-10427800	Enhancers	HMEC	breast
4	chr2:10422800-10427200	Enhancers	Adipose Nuclei	Adipose
5	chr2:10422800-10427400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr2:10422800-10427400	Enhancers	Brain Inferior Temporal Lobe	brain
7	chr2:10422800-10427400	Enhancers	Brain Substantia Nigra	brain
8	chr2:10422800-10427600	Enhancers	Brain Anterior Caudate	brain
9	chr2:10422800-10428000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr2:10423000-10427400	Enhancers	Brain Cingulate Gyrus	brain
11	chr2:10423000-10427600	Enhancers	Cortex derived primary cultured neurospheres	brain
12	chr2:10423400-10429800	Enhancers	Muscle Satellite Cultured Cells	--
13	chr2:10423600-10427200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr2:10424400-10427400	Enhancers	Brain Angular Gyrus	brain
15	chr2:10424400-10427400	Enhancers	Fetal Muscle Leg	muscle
16	chr2:10424400-10429600	Enhancers	Liver	Liver
17	chr2:10424600-10427200	Enhancers	Skeletal Muscle Female	skeletal muscle
18	chr2:10424600-10427400	Enhancers	Breast Myoepithelial Primary Cells	Breast
19	chr2:10424800-10427200	Enhancers	Fetal Brain Female	brain
20	chr2:10424800-10427200	Enhancers	Right Ventricle	heart
21	chr2:10424800-10427400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr2:10425000-10427200	Enhancers	Colon Smooth Muscle	Colon
23	chr2:10425000-10427200	Enhancers	Duodenum Smooth Muscle	Duodenum
24	chr2:10425000-10427800	Enhancers	Stomach Mucosa	stomach
25	chr2:10425200-10427200	Enhancers	HUES6 Cell Line	embryonic stem cell
26	chr2:10425200-10427200	Enhancers	Fetal Heart	heart
27	chr2:10425200-10427200	Flanking Active TSS	HepG2	liver
28	chr2:10425200-10427400	Enhancers	Fetal Lung	lung
29	chr2:10425400-10427200	Enhancers	Colonic Mucosa	Colon
30	chr2:10425400-10427200	Enhancers	Fetal Brain Male	brain
31	chr2:10425400-10427200	Enhancers	Pancreas	Pancrea
32	chr2:10425400-10427400	Enhancers	Brain Germinal Matrix	brain
33	chr2:10425400-10427400	Enhancers	Left Ventricle	heart
34	chr2:10425400-10427400	Enhancers	Lung	lung
35	chr2:10425400-10427400	Enhancers	Rectal Smooth Muscle	rectum
36	chr2:10425400-10427600	Enhancers	Duodenum Mucosa	Duodenum
37	chr2:10425800-10427400	Bivalent Enhancer	Fetal Muscle Trunk	muscle
38	chr2:10425800-10427400	Enhancers	Gastric	stomach
39	chr2:10426000-10427600	Enhancers	Primary hematopoietic stem cells short term culture	blood
40	chr2:10426200-10427200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr2:10426200-10427200	Enhancers	Brain Hippocampus Middle	brain
42	chr2:10426200-10427200	Enhancers	Skeletal Muscle Male	skeletal muscle
43	chr2:10426200-10427400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
44	chr2:10426200-10427400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
45	chr2:10426200-10427400	Enhancers	HSMM	muscle
46	chr2:10426200-10428000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
47	chr2:10426200-10428600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr2:10426200-10429600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
49	chr2:10426200-10438000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
50	chr2:10426400-10427200	Weak transcription	HSMMtube	muscle

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