Variant report

Variant	rs34660856
Chromosome Location	chr1:98665834-98665835
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs12069773	1.00[ASN][1000 genomes]
rs12082064	1.00[ASN][1000 genomes]
rs12083930	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12094082	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13373752	1.00[ASN][1000 genomes]
rs13374002	1.00[ASN][1000 genomes]
rs17100664	1.00[ASN][1000 genomes]
rs17117724	1.00[ASN][1000 genomes]
rs17381615	1.00[ASN][1000 genomes]
rs17385693	1.00[ASN][1000 genomes]
rs2200584	1.00[ASN][1000 genomes]
rs35492075	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72737820	1.00[ASN][1000 genomes]
rs7554083	1.00[ASN][1000 genomes]
rs7554282	1.00[ASN][1000 genomes]
rs977630	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012958	chr1:98081528-98864746	Weak transcription Enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv823631	chr1:98554257-98687985	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1010393	chr1:98643684-98698557	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:98647200-98669000	Weak transcription	HUVEC	blood vessel

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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