Variant report

Variant	rs34662182
Chromosome Location	chr11:86159223-86159224
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:86156987..86159385-chr19:51409704..51412105,2	MCF-7	breast:
2	chr11:86158745..86161697-chr11:86162111..86164358,2	MCF-7	breast:
3	chr11:86152679..86155183-chr11:86156191..86160903,4	K562	blood:

Variant related genes	Relation type
ENSG00000167749	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs12292032	0.92[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17149180	1.00[ASN][1000 genomes]
rs1945141	1.00[ASN][1000 genomes]
rs2156532	1.00[ASN][1000 genomes]
rs4614483	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs55642252	1.00[ASN][1000 genomes]
rs56272084	1.00[ASN][1000 genomes]
rs58173252	1.00[ASN][1000 genomes]
rs58968600	1.00[ASN][1000 genomes]
rs59339534	1.00[ASN][1000 genomes]
rs61182121	1.00[ASN][1000 genomes]
rs61372386	1.00[ASN][1000 genomes]
rs7941124	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044081	chr11:86133641-86868560	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv541118	chr11:86133641-86868560	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	nsv898056	chr11:86156848-86304402	Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:86136800-86170200	Weak transcription	Fetal Heart	heart
2	chr11:86138600-86167400	Weak transcription	Fetal Lung	lung
3	chr11:86142000-86167400	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr11:86145400-86167400	Weak transcription	Pancreas	Pancrea
5	chr11:86150200-86167400	Weak transcription	Stomach Mucosa	stomach
6	chr11:86150600-86159400	Strong transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr11:86151200-86159800	Strong transcription	Fetal Brain Female	brain
8	chr11:86151200-86159800	Strong transcription	Fetal Stomach	stomach
9	chr11:86151800-86167400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr11:86151800-86167400	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr11:86152200-86159400	Strong transcription	Adipose Nuclei	Adipose
12	chr11:86152400-86164000	Weak transcription	Brain Substantia Nigra	brain
13	chr11:86152400-86172200	Weak transcription	Fetal Brain Male	brain
14	chr11:86152600-86159600	Strong transcription	Stomach Smooth Muscle	stomach
15	chr11:86153000-86161200	Weak transcription	Colonic Mucosa	Colon
16	chr11:86153200-86187000	Weak transcription	Fetal Kidney	kidney
17	chr11:86153400-86159400	Strong transcription	Right Ventricle	heart
18	chr11:86154000-86166800	Weak transcription	A549	lung
19	chr11:86154000-86167400	Weak transcription	NH-A	brain
20	chr11:86154000-86169600	Weak transcription	HSMM	muscle
21	chr11:86154000-86170800	Weak transcription	Esophagus	oesophagus
22	chr11:86154200-86159800	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr11:86154200-86160600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr11:86154200-86167000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr11:86154600-86167400	Weak transcription	Hela-S3	cervix
26	chr11:86154600-86170600	Weak transcription	Brain Cingulate Gyrus	brain
27	chr11:86154800-86159600	Strong transcription	Lung	lung
28	chr11:86154800-86171000	Weak transcription	Placenta Amnion	Placenta Amnion
29	chr11:86155000-86167400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr11:86156200-86160600	Weak transcription	Brain Angular Gyrus	brain
31	chr11:86156400-86167400	Weak transcription	Rectal Mucosa Donor 31	rectum
32	chr11:86156600-86167400	Weak transcription	Colon Smooth Muscle	Colon
33	chr11:86156800-86169400	Weak transcription	Osteobl	bone
34	chr11:86157000-86167400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr11:86157000-86179800	Weak transcription	Fetal Intestine Large	intestine
36	chr11:86157400-86159800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
37	chr11:86157400-86170800	Weak transcription	Psoas Muscle	Psoas
38	chr11:86157800-86160200	Enhancers	Fetal Thymus	thymus
39	chr11:86157800-86166400	Weak transcription	Brain Hippocampus Middle	brain
40	chr11:86158000-86170800	Weak transcription	Fetal Muscle Trunk	muscle
41	chr11:86158200-86160200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
42	chr11:86158200-86167600	Weak transcription	Spleen	Spleen
43	chr11:86158400-86161600	Enhancers	Primary hematopoietic stem cells short term culture	blood
44	chr11:86158600-86160000	Weak transcription	Brain Germinal Matrix	brain
45	chr11:86158600-86161400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
46	chr11:86158600-86167400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
47	chr11:86158600-86167400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
48	chr11:86158600-86167400	Weak transcription	Fetal Muscle Leg	muscle
49	chr11:86158600-86167400	Weak transcription	Left Ventricle	heart
50	chr11:86158600-86167400	Weak transcription	Ovary	ovary

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