Variant report

Variant	rs34667541
Chromosome Location	chr13:111201390-111201391
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr13:111200336..111203399-chr13:111205632..111210052,4	MCF-7	breast:
2	chr13:111198748..111201461-chr13:111207040..111209590,2	K562	blood:
3	chr13:111166073..111168474-chr13:111201353..111203309,2	MCF-7	breast:
4	chr13:111197640..111199252-chr13:111199742..111202683,2	K562	blood:

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs331593	1.00[EUR][1000 genomes]
rs34279461	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34596419	0.85[EUR][1000 genomes]
rs34659504	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34664408	1.00[EUR][1000 genomes]
rs34874478	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35653645	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71440068	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71440071	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs71440073	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71440074	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046423	chr13:110936104-111286607	Weak transcription Strong transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv832720	chr13:111100235-111295993	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv1046291	chr13:111125747-111257861	Weak transcription Active TSS Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	nsv1045143	chr13:111126822-111242791	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
5	nsv1044234	chr13:111143053-111370580	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	216 gene(s)	inside rSNPs	diseases
6	nsv949634	chr13:111151460-111582996	Genic enhancers Weak transcription Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	245 gene(s)	inside rSNPs	diseases
7	nsv901010	chr13:111165390-111286592	Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
8	nsv1053922	chr13:111167764-111330876	Flanking Active TSS Strong transcription Genic enhancers Weak transcription Bivalent Enhancer Enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
9	nsv1043849	chr13:111167764-111340418	Bivalent Enhancer Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
10	nsv541924	chr13:111167764-111340418	Strong transcription Active TSS Weak transcription Genic enhancers Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
11	nsv1036160	chr13:111167764-111347308	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
12	nsv541925	chr13:111167764-111347308	Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
13	nsv901011	chr13:111168951-111280002	Flanking Active TSS Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:65 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:111160800-111209600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr13:111182400-111203600	Weak transcription	Brain Substantia Nigra	brain
3	chr13:111184000-111211800	Weak transcription	HMEC	breast
4	chr13:111184600-111209800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr13:111188400-111203600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr13:111189000-111201600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr13:111191200-111213000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
8	chr13:111191400-111203600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr13:111191400-111207200	Weak transcription	Primary neutrophils fromperipheralblood	blood
10	chr13:111192200-111212000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr13:111194200-111203800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr13:111194400-111203600	Weak transcription	Fetal Stomach	stomach
13	chr13:111194400-111203800	Weak transcription	Psoas Muscle	Psoas
14	chr13:111194400-111212000	Weak transcription	K562	blood
15	chr13:111195000-111202800	Weak transcription	Duodenum Smooth Muscle	Duodenum
16	chr13:111195200-111203600	Weak transcription	Right Ventricle	heart
17	chr13:111195400-111203200	Weak transcription	Fetal Heart	heart
18	chr13:111195400-111211400	Weak transcription	Rectal Smooth Muscle	rectum
19	chr13:111197200-111203000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr13:111197200-111211800	Weak transcription	H1 Cell Line	embryonic stem cell
21	chr13:111197800-111204200	Enhancers	Pancreas	Pancrea
22	chr13:111197800-111208400	Weak transcription	HUES64 Cell Line	embryonic stem cell
23	chr13:111198800-111203000	Strong transcription	Fetal Intestine Small	intestine
24	chr13:111199200-111201400	Strong transcription	Fetal Intestine Large	intestine
25	chr13:111199800-111202800	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland
26	chr13:111199800-111203200	Weak transcription	Osteobl	bone
27	chr13:111199800-111203600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr13:111199800-111205400	Weak transcription	H9 Cell Line	embryonic stem cell
29	chr13:111199800-111211800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr13:111199800-111212000	Weak transcription	Esophagus	oesophagus
31	chr13:111200000-111201400	Weak transcription	Spleen	Spleen
32	chr13:111200000-111201600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
33	chr13:111200000-111202000	Enhancers	Liver	Liver
34	chr13:111200000-111202400	Weak transcription	HepG2	liver
35	chr13:111200000-111203600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr13:111200000-111203600	Weak transcription	Small Intestine	intestine
37	chr13:111200000-111203800	Weak transcription	Sigmoid Colon	Sigmoid Colon
38	chr13:111200000-111204000	Weak transcription	Muscle Satellite Cultured Cells	--
39	chr13:111200000-111205200	Weak transcription	Aorta	Aorta
40	chr13:111200000-111207600	Weak transcription	Colonic Mucosa	Colon
41	chr13:111200200-111202800	Weak transcription	Adipose Nuclei	Adipose
42	chr13:111200200-111203600	Weak transcription	Duodenum Mucosa	Duodenum
43	chr13:111200200-111203600	Weak transcription	Left Ventricle	heart
44	chr13:111200200-111203600	Weak transcription	Lung	lung
45	chr13:111200200-111203600	Weak transcription	Rectal Mucosa Donor 31	rectum
46	chr13:111200200-111203800	Weak transcription	Skeletal Muscle Female	skeletal muscle
47	chr13:111200200-111206600	Weak transcription	Stomach Smooth Muscle	stomach
48	chr13:111200200-111207400	Weak transcription	Rectal Mucosa Donor 29	rectum
49	chr13:111200200-111207800	Weak transcription	Primary monocytes fromperipheralblood	blood
50	chr13:111200200-111211800	Weak transcription	ES-I3 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links