Variant report

Variant	rs34667733
Chromosome Location	chr17:38554288-38554289
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10305284	1.00[EUR][1000 genomes]
rs11871146	1.00[EUR][1000 genomes]
rs12939120	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58292904	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7208555	1.00[EUR][1000 genomes]
rs7212482	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73309055	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8077355	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833445	chr17:38466474-38637969	Flanking Active TSS Enhancers Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
2	nsv908223	chr17:38530799-38609187	Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:80 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:38536800-38562000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr17:38537200-38558600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr17:38538200-38557400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr17:38538400-38559200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr17:38539400-38565800	Weak transcription	Placenta	Placenta
6	chr17:38540200-38571400	Strong transcription	Fetal Thymus	thymus
7	chr17:38541800-38559000	Strong transcription	A549	lung
8	chr17:38542000-38555000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr17:38542000-38556800	Weak transcription	Fetal Lung	lung
10	chr17:38542200-38571600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
11	chr17:38542400-38560400	Strong transcription	Dnd41	blood
12	chr17:38542600-38566000	Strong transcription	HUES64 Cell Line	embryonic stem cell
13	chr17:38542600-38566400	Strong transcription	HUES6 Cell Line	embryonic stem cell
14	chr17:38542600-38571800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr17:38543000-38557000	Weak transcription	Rectal Mucosa Donor 29	rectum
16	chr17:38543000-38566000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
17	chr17:38543200-38559000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr17:38543200-38571000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr17:38543400-38571000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr17:38543400-38571400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr17:38543400-38571800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr17:38543800-38555200	Strong transcription	HUVEC	blood vessel
23	chr17:38543800-38566000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
24	chr17:38543800-38566400	Strong transcription	HUES48 Cell Line	embryonic stem cell
25	chr17:38543800-38566400	Weak transcription	Fetal Heart	heart
26	chr17:38544000-38561200	Strong transcription	Hela-S3	cervix
27	chr17:38544000-38566600	Strong transcription	H1 Cell Line	embryonic stem cell
28	chr17:38544000-38566800	Strong transcription	H9 Cell Line	embryonic stem cell
29	chr17:38544000-38569800	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
30	chr17:38544000-38570200	Strong transcription	HepG2	liver
31	chr17:38544000-38571800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr17:38544200-38561400	Strong transcription	Osteobl	bone
33	chr17:38544200-38567000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
34	chr17:38544400-38566600	Strong transcription	iPS-15b Cell Line	embryonic stem cell
35	chr17:38544400-38573200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
36	chr17:38545200-38573200	Weak transcription	Gastric	stomach
37	chr17:38546000-38573600	Weak transcription	Sigmoid Colon	Sigmoid Colon
38	chr17:38546400-38572200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
39	chr17:38546400-38572800	Weak transcription	Rectal Mucosa Donor 31	rectum
40	chr17:38546400-38573200	Weak transcription	Placenta Amnion	Placenta Amnion
41	chr17:38547800-38559000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
42	chr17:38547800-38565200	Weak transcription	Esophagus	oesophagus
43	chr17:38548200-38572000	Weak transcription	Brain Germinal Matrix	brain
44	chr17:38548400-38556800	Weak transcription	Primary hematopoietic stem cells	blood
45	chr17:38548400-38572800	Weak transcription	Primary B cells from cord blood	blood
46	chr17:38549000-38554400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
47	chr17:38549000-38554600	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
48	chr17:38549000-38554600	Strong transcription	Fetal Intestine Small	intestine
49	chr17:38549400-38557200	Weak transcription	Duodenum Mucosa	Duodenum
50	chr17:38549800-38573000	Weak transcription	Fetal Intestine Large	intestine

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