The 2.0 version of rSNPBase

Variant report

Variant rs34671406
Chromosome Location chr20:16461616-16461617
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:70 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr20:16410200-16473200 Weak transcription Primary T helper cells PMA-I stimulated --
2 chr20:16420800-16471400 Weak transcription Primary hematopoietic stem cells blood
3 chr20:16431400-16463000 Weak transcription Aorta Aorta
4 chr20:16431400-16508200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
5 chr20:16431800-16462200 Weak transcription Primary T cells from cord blood blood
6 chr20:16436600-16464800 Weak transcription Small Intestine intestine
7 chr20:16440400-16468800 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
8 chr20:16443600-16468600 Weak transcription Fetal Muscle Trunk muscle
9 chr20:16443800-16469600 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
10 chr20:16443800-16469600 Weak transcription Lung lung
11 chr20:16444000-16466800 Weak transcription ES-I3 Cell Line embryonic stem cell
12 chr20:16448000-16483600 Weak transcription Pancreas Pancrea
13 chr20:16449400-16500600 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
14 chr20:16451200-16488400 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
15 chr20:16451400-16478600 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
16 chr20:16453000-16469600 Weak transcription Ovary ovary
17 chr20:16453400-16470000 Weak transcription Esophagus oesophagus
18 chr20:16453400-16473400 Weak transcription Left Ventricle heart
19 chr20:16453600-16471800 Weak transcription NHEK skin
20 chr20:16453600-16508200 Weak transcription Stomach Mucosa stomach
21 chr20:16454400-16467200 Weak transcription K562 blood
22 chr20:16454800-16483600 Weak transcription Spleen Spleen
23 chr20:16455400-16467600 Weak transcription Psoas Muscle Psoas
24 chr20:16455600-16468800 Weak transcription Colonic Mucosa Colon
25 chr20:16456200-16483800 Weak transcription Fetal Adrenal Gland Adrenal Gland
26 chr20:16456400-16468600 Weak transcription Brain Cingulate Gyrus brain
27 chr20:16456800-16463800 Weak transcription Fetal Lung lung
28 chr20:16456800-16464000 Weak transcription Fetal Muscle Leg muscle
29 chr20:16456800-16465000 Weak transcription Brain Anterior Caudate brain
30 chr20:16456800-16465600 Weak transcription Skeletal Muscle Female skeletal muscle
31 chr20:16456800-16465800 Weak transcription HSMMtube muscle
32 chr20:16456800-16466600 Weak transcription Skeletal Muscle Male skeletal muscle
33 chr20:16456800-16467200 Weak transcription Fetal Heart heart
34 chr20:16456800-16468800 Weak transcription Brain Substantia Nigra brain
35 chr20:16456800-16469200 Weak transcription Brain Hippocampus Middle brain
36 chr20:16456800-16471600 Weak transcription Duodenum Smooth Muscle Duodenum
37 chr20:16456800-16472200 Weak transcription Liver Liver
38 chr20:16456800-16473800 Weak transcription Primary B cells from cord blood blood
39 chr20:16456800-16487600 Weak transcription Brain Inferior Temporal Lobe brain
40 chr20:16456800-16488200 Weak transcription Rectal Smooth Muscle rectum
41 chr20:16458600-16464400 Weak transcription Colon Smooth Muscle Colon
42 chr20:16458600-16476400 Weak transcription Primary mononuclear cells fromperipheralblood Blood
43 chr20:16458600-16484200 Weak transcription A549 lung
44 chr20:16458800-16462200 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
45 chr20:16458800-16464200 Weak transcription Rectal Mucosa Donor 29 rectum
46 chr20:16458800-16471200 Weak transcription Primary monocytes fromperipheralblood blood
47 chr20:16458800-16471200 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
48 chr20:16458800-16471400 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
49 chr20:16458800-16477400 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
50 chr20:16458800-16480800 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived

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Last update: Aug 31, 2015