Variant report
| Variant | rs34673322 |
|---|---|
| Chromosome Location | chr11:101119647-101119648 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs10895088 | 0.82[EUR][1000 genomes] |
| rs11224681 | 0.82[EUR][1000 genomes] |
| rs11224685 | 0.82[EUR][1000 genomes] |
| rs11224686 | 0.82[EUR][1000 genomes] |
| rs12790750 | 0.90[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs12793035 | 1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs12805701 | 0.82[EUR][1000 genomes] |
| rs12807358 | 0.90[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs34114480 | 1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs34223959 | 0.92[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs34391750 | 0.90[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs34604180 | 0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs34712605 | 0.90[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs35253160 | 0.90[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs35401637 | 0.90[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs35538677 | 0.87[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs35805525 | 0.82[EUR][1000 genomes] |
| rs35978545 | 0.87[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs4121759 | 0.90[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs67598074 | 0.82[EUR][1000 genomes] |
| rs71476672 | 0.90[AMR][1000 genomes];0.95[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv556131 | chr11:100985777-101480017 | Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 7 gene(s) | inside rSNPs | diseases |
| 2 | nsv530644 | chr11:101010088-101486038 | Strong transcription Weak transcription Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 5 gene(s) | inside rSNPs | diseases |
| 3 | esv2753322 | chr11:101052790-101311790 | Flanking Bivalent TSS/Enh Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr11:101116600-101125800 | Weak transcription | Ovary | ovary |
