Variant report

Variant	rs34676693
Chromosome Location	chr8:96055709-96055710
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:96053111..96056097-chr8:96061243..96063716,2	MCF-7	breast:
2	chr8:96055071..96057640-chr8:96260633..96262435,2	MCF-7	breast:
3	chr8:95729243..95731329-chr8:96054222..96055835,2	MCF-7	breast:
4	chr8:96053751..96055712-chr8:96064518..96066585,2	K562	blood:
5	chr8:96054975..96057143-chr8:96279767..96281348,2	MCF-7	breast:
6	chr8:96040756..96042437-chr8:96054140..96055940,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000253773	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs2122959	0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2599710	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2678822	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2678827	0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59675487	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017301	chr8:95273503-96248352	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
2	nsv539680	chr8:95273503-96248352	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
3	nsv508520	chr8:95939373-96140068	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	35 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:96037800-96070200	Weak transcription	Aorta	Aorta
2	chr8:96038000-96063800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr8:96038200-96058800	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr8:96038200-96059200	Weak transcription	Right Ventricle	heart
5	chr8:96038200-96061000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr8:96038200-96061200	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr8:96038200-96061200	Weak transcription	Psoas Muscle	Psoas
8	chr8:96038200-96072400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr8:96038200-96080000	Weak transcription	Colonic Mucosa	Colon
10	chr8:96038400-96060600	Weak transcription	NHLF	lung
11	chr8:96038400-96061000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr8:96038400-96063600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr8:96038400-96066800	Weak transcription	Stomach Mucosa	stomach
14	chr8:96038400-96085200	Weak transcription	Pancreatic Islets	Pancreatic Islet
15	chr8:96038600-96059200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr8:96038600-96059800	Weak transcription	Cortex derived primary cultured neurospheres	brain
17	chr8:96038600-96061000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr8:96038600-96061200	Weak transcription	Small Intestine	intestine
19	chr8:96038800-96058800	Weak transcription	Fetal Brain Male	brain
20	chr8:96039200-96061000	Weak transcription	Pancreas	Pancrea
21	chr8:96042800-96072200	Strong transcription	Primary T helper cells fromperipheralblood	blood
22	chr8:96043600-96063600	Strong transcription	Primary B cells from peripheral blood	blood
23	chr8:96044200-96059800	Strong transcription	Primary monocytes fromperipheralblood	blood
24	chr8:96044200-96060600	Strong transcription	Monocytes-CD14+_RO01746	blood
25	chr8:96044200-96062600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
26	chr8:96044200-96071800	Strong transcription	Dnd41	blood
27	chr8:96044400-96063200	Strong transcription	Stomach Smooth Muscle	stomach
28	chr8:96044400-96066600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
29	chr8:96044400-96066800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
30	chr8:96044600-96065200	Strong transcription	Primary T helper cells PMA-I stimulated	--
31	chr8:96044800-96066600	Strong transcription	Fetal Thymus	thymus
32	chr8:96045000-96068800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
33	chr8:96045200-96060400	Weak transcription	Brain Substantia Nigra	brain
34	chr8:96045800-96064000	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
35	chr8:96046200-96056000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
36	chr8:96046200-96061000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
37	chr8:96046400-96070200	Weak transcription	Gastric	stomach
38	chr8:96047000-96059200	Weak transcription	Rectal Smooth Muscle	rectum
39	chr8:96047600-96056200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
40	chr8:96048400-96057000	Strong transcription	Fetal Muscle Leg	muscle
41	chr8:96048400-96057400	Strong transcription	Primary T cells from cord blood	blood
42	chr8:96048400-96071800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
43	chr8:96048600-96060200	Weak transcription	Ovary	ovary
44	chr8:96048800-96056400	Strong transcription	Skeletal Muscle Female	skeletal muscle
45	chr8:96050000-96063800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
46	chr8:96050800-96058800	Weak transcription	NHEK	skin
47	chr8:96051600-96061000	Weak transcription	Spleen	Spleen
48	chr8:96051800-96056200	Strong transcription	HepG2	liver
49	chr8:96051800-96056600	Strong transcription	Primary neutrophils fromperipheralblood	blood
50	chr8:96051800-96056800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links