Variant report

Variant	rs34682332
Chromosome Location	chr7:107674791-107674792
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:107667815..107670086-chr7:107674390..107676975,2	K562	blood:
2	chr7:107645714..107647859-chr7:107673196..107674868,2	K562	blood:
3	chr7:107645714..107648446-chr7:107672841..107674868,3	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-LAMB1-1	chr7:107674653-107674791	NONHSAT122727

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10225239	1.00[AMR][1000 genomes]
rs10227650	1.00[AMR][1000 genomes]
rs10234410	1.00[AMR][1000 genomes]
rs10235073	1.00[AMR][1000 genomes]
rs10247441	1.00[AMR][1000 genomes]
rs10251655	1.00[AMR][1000 genomes]
rs10252718	1.00[AMR][1000 genomes]
rs10256475	1.00[AMR][1000 genomes]
rs10262726	1.00[AMR][1000 genomes]
rs10263709	1.00[AMR][1000 genomes]
rs10266877	1.00[AMR][1000 genomes]
rs10279790	1.00[AMR][1000 genomes]
rs28373916	1.00[AMR][1000 genomes]
rs28418445	1.00[AMR][1000 genomes]
rs28565878	1.00[AMR][1000 genomes]
rs28578635	1.00[AMR][1000 genomes]
rs41338849	1.00[AMR][1000 genomes]
rs55945586	1.00[AMR][1000 genomes]
rs56325000	1.00[AMR][1000 genomes]
rs58732508	1.00[AMR][1000 genomes]
rs60225475	1.00[AMR][1000 genomes]
rs9987047	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033979	chr7:107003734-107877761	Strong transcription Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
2	esv3348839	chr7:107377311-108286538	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	91 gene(s)	inside rSNPs	diseases
3	nsv949344	chr7:107396502-107987085	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
4	nsv831088	chr7:107497100-107693680	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:107671800-107675600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr7:107672000-107676600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr7:107673000-107675600	Enhancers	HUES6 Cell Line	embryonic stem cell
4	chr7:107673200-107675600	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr7:107673200-107675600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr7:107673600-107675600	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr7:107673600-107675600	Enhancers	H1 Cell Line	embryonic stem cell
8	chr7:107673600-107675600	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr7:107673600-107675600	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr7:107673800-107674800	Enhancers	HepG2	liver
11	chr7:107674200-107675600	Enhancers	iPS-15b Cell Line	embryonic stem cell
12	chr7:107674200-107675600	Enhancers	A549	lung
13	chr7:107674400-107674800	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr7:107674400-107675400	Enhancers	iPS-20b Cell Line	embryonic stem cell
15	chr7:107674400-107675600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr7:107674400-107675600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
17	chr7:107674400-107675800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
18	chr7:107674600-107675800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr7:107674600-107676800	Weak transcription	K562	blood

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