Variant report

Variant	rs34687387
Chromosome Location	chr6:34319871-34319872
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:34318109..34321086-chr6:34360029..34361626,2	MCF-7	breast:
2	chr6:34311894..34313491-chr6:34319028..34320786,2	K562	blood:
3	chr6:34314465..34317126-chr6:34317621..34320996,4	K562	blood:

Variant related genes	Relation type
ENSG00000272325	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs1150776	1.00[MEX][hapmap]
rs1150782	1.00[MEX][hapmap]
rs34052020	1.00[MEX][hapmap]
rs6918371	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3526078	chr6:34315303-34320020	Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	esv3509192	chr6:34315574-34320922	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	esv3509193	chr6:34315574-34320922	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv3526073	chr6:34315874-34320672	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv602886	chr6:34317120-34319871	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	esv1799298	chr6:34317120-34322841	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv1022844	chr6:34317219-35060519	Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
8	nsv538195	chr6:34317219-35060519	Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Weak transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:75 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:34261800-34330800	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr6:34285200-34330600	Weak transcription	Thymus	Thymus
3	chr6:34285800-34326600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr6:34289000-34325200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr6:34298600-34326400	Weak transcription	A549	lung
6	chr6:34306000-34327800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
7	chr6:34306000-34328800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
8	chr6:34307000-34320000	Weak transcription	Ovary	ovary
9	chr6:34308800-34330800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr6:34309600-34329200	Weak transcription	Primary T helper cells fromperipheralblood	blood
11	chr6:34309800-34320000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr6:34309800-34320000	Weak transcription	Pancreas	Pancrea
13	chr6:34309800-34320200	Weak transcription	HepG2	liver
14	chr6:34309800-34321400	Weak transcription	Lung	lung
15	chr6:34309800-34327000	Weak transcription	Fetal Muscle Trunk	muscle
16	chr6:34309800-34329800	Weak transcription	Fetal Thymus	thymus
17	chr6:34309800-34330800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
18	chr6:34309800-34337600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr6:34309800-34347200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
20	chr6:34310000-34320200	Weak transcription	Fetal Stomach	stomach
21	chr6:34310000-34330600	Weak transcription	Dnd41	blood
22	chr6:34310400-34320000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr6:34310400-34321600	Weak transcription	Right Ventricle	heart
24	chr6:34310400-34329200	Weak transcription	Brain Angular Gyrus	brain
25	chr6:34310600-34320000	Weak transcription	Brain Cingulate Gyrus	brain
26	chr6:34310600-34326400	Weak transcription	Rectal Smooth Muscle	rectum
27	chr6:34310800-34320000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr6:34310800-34330800	Weak transcription	Primary T cells from cord blood	blood
29	chr6:34311200-34321800	Weak transcription	Psoas Muscle	Psoas
30	chr6:34314800-34320200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
31	chr6:34315400-34351200	Weak transcription	Pancreatic Islets	Pancreatic Islet
32	chr6:34316200-34333400	Weak transcription	Placenta	Placenta
33	chr6:34317000-34320400	Enhancers	Primary monocytes fromperipheralblood	blood
34	chr6:34317400-34330800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr6:34317600-34320000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr6:34318000-34320000	Enhancers	Monocytes-CD14+_RO01746	blood
37	chr6:34318000-34320200	Enhancers	Primary B cells from cord blood	blood
38	chr6:34318000-34320400	Enhancers	K562	blood
39	chr6:34318200-34320000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr6:34318200-34326400	Weak transcription	Fetal Muscle Leg	muscle
41	chr6:34318200-34330600	Weak transcription	Brain Hippocampus Middle	brain
42	chr6:34318200-34355800	Weak transcription	Brain Germinal Matrix	brain
43	chr6:34318400-34320000	Weak transcription	Colon Smooth Muscle	Colon
44	chr6:34318400-34320000	Weak transcription	Skeletal Muscle Male	skeletal muscle
45	chr6:34318400-34326000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
46	chr6:34318400-34330000	Weak transcription	Primary hematopoietic stem cells	blood
47	chr6:34318600-34320000	Weak transcription	Osteobl	bone
48	chr6:34318600-34330600	Weak transcription	Fetal Intestine Small	intestine
49	chr6:34318800-34320000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr6:34318800-34320000	Weak transcription	Fetal Brain Male	brain

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