Variant report

Variant	rs34688904
Chromosome Location	chr18:24489902-24489903
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10502480	0.90[AMR][1000 genomes]
rs11659941	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17621185	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs3974648	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9304502	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761995	chr18:24214286-24502570	Bivalent Enhancer Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv833600	chr18:24473894-24681019	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv909472	chr18:24479960-24614192	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:24488200-24492600	Enhancers	Cortex derived primary cultured neurospheres	brain
2	chr18:24488400-24501200	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr18:24488600-24490600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr18:24489000-24490400	Enhancers	Stomach Smooth Muscle	stomach
5	chr18:24489200-24490600	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr18:24489400-24491200	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr18:24489600-24490000	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr18:24489600-24490200	Enhancers	Duodenum Smooth Muscle	Duodenum
9	chr18:24489600-24491200	Enhancers	Breast Myoepithelial Primary Cells	Breast
10	chr18:24489600-24492000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
11	chr18:24489800-24490000	Enhancers	Brain Anterior Caudate	brain
12	chr18:24489800-24490200	Enhancers	Ovary	ovary
13	chr18:24489800-24490400	Enhancers	ES-I3 Cell Line	embryonic stem cell
14	chr18:24489800-24490400	Weak transcription	H1 Cell Line	embryonic stem cell
15	chr18:24489800-24490400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr18:24489800-24490400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
17	chr18:24489800-24490600	Enhancers	H9 Cell Line	embryonic stem cell
18	chr18:24489800-24490600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr18:24489800-24490600	Enhancers	HUES48 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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