Variant report

Variant	rs34692025
Chromosome Location	chr7:78264474-78264475
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs17151199	0.90[JPT][hapmap]
rs2362942	0.85[CHB][hapmap];0.81[CHD][hapmap];0.80[ASN][1000 genomes]
rs57530690	0.91[ASN][1000 genomes]
rs6947321	0.92[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022764	chr7:77911072-78316607	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1022199	chr7:78054639-78469370	Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv538986	chr7:78054639-78469370	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs34692025	YWHAG	cis	cerebellum	SCAN
rs34692025	SERPINB10	trans	lymphoblastoid	seeQTL

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:78252600-78266400	Weak transcription	Aorta	Aorta
2	chr7:78254200-78268800	Weak transcription	Brain Germinal Matrix	brain
3	chr7:78257000-78264600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr7:78257600-78266200	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr7:78263000-78264800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr7:78263200-78265200	Enhancers	Pancreatic Islets	Pancreatic Islet
7	chr7:78263400-78265200	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr7:78263400-78265200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr7:78263400-78265200	Enhancers	Brain Anterior Caudate	brain
10	chr7:78263400-78265200	Enhancers	Brain Hippocampus Middle	brain
11	chr7:78263400-78265600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr7:78263600-78264600	Enhancers	Brain Angular Gyrus	brain
13	chr7:78263600-78265200	Enhancers	Brain Cingulate Gyrus	brain
14	chr7:78263600-78265200	Enhancers	Brain Substantia Nigra	brain
15	chr7:78263600-78265400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr7:78264000-78266200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr7:78264000-78266200	Weak transcription	HUES6 Cell Line	embryonic stem cell
18	chr7:78264000-78266200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
19	chr7:78264000-78269000	Weak transcription	Brain Inferior Temporal Lobe	brain
20	chr7:78264200-78264600	Weak transcription	HUES48 Cell Line	embryonic stem cell
21	chr7:78264400-78265000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr7:78264400-78265000	Enhancers	Muscle Satellite Cultured Cells	--
23	chr7:78264400-78265000	Enhancers	Osteobl	bone

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links