Variant report

Variant	rs34701787
Chromosome Location	chr7:69264273-69264274
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:69261294..69262841-chr7:69263161..69265918,2	MCF-7	breast:
2	chr7:69250400..69252185-chr7:69263342..69266256,2	K562	blood:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs1003404	0.84[ASN][1000 genomes]
rs10260553	0.87[ASN][1000 genomes]
rs12698809	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12698810	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12698811	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12698821	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12698837	0.82[AMR][1000 genomes]
rs13221186	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs13227197	0.83[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs13228686	0.85[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs1548748	0.87[ASN][1000 genomes]
rs17140890	0.89[ASN][1000 genomes]
rs1990444	0.87[ASN][1000 genomes]
rs210602	0.87[ASN][1000 genomes]
rs210605	0.87[ASN][1000 genomes]
rs2215354	0.82[ASN][1000 genomes]
rs2533436	0.82[ASN][1000 genomes]
rs2533437	0.87[ASN][1000 genomes]
rs2851486	0.87[ASN][1000 genomes]
rs2851493	0.84[ASN][1000 genomes]
rs2851519	0.82[ASN][1000 genomes]
rs2851520	0.84[ASN][1000 genomes]
rs4717522	0.87[ASN][1000 genomes]
rs548556	0.87[ASN][1000 genomes]
rs569334	0.87[ASN][1000 genomes]
rs628885	0.87[ASN][1000 genomes]
rs633927	0.87[ASN][1000 genomes]
rs6953849	0.89[ASN][1000 genomes]
rs7789364	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs917617	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916011	chr7:68942155-69330800	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv831021	chr7:69122169-69364491	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv1021538	chr7:69130236-69575753	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv538917	chr7:69130236-69575753	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv817276	chr7:69130237-69736834	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv1018749	chr7:69149029-69995112	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:69247000-69264400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr7:69249800-69269600	Weak transcription	Brain Angular Gyrus	brain
3	chr7:69253400-69278800	Weak transcription	Fetal Stomach	stomach
4	chr7:69253600-69264600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr7:69254400-69265600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr7:69255000-69276600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr7:69256000-69265200	Weak transcription	Right Atrium	heart
8	chr7:69256800-69265000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr7:69257000-69265200	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr7:69257200-69265800	Weak transcription	Brain Germinal Matrix	brain
11	chr7:69258600-69264400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr7:69259000-69269200	Weak transcription	Fetal Brain Male	brain
13	chr7:69259200-69264400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr7:69259200-69265400	Weak transcription	Colon Smooth Muscle	Colon
15	chr7:69259400-69264400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr7:69259400-69265400	Weak transcription	Rectal Smooth Muscle	rectum
17	chr7:69259600-69264400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
18	chr7:69259600-69264400	Weak transcription	Fetal Intestine Small	intestine
19	chr7:69259600-69264600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr7:69259600-69264600	Weak transcription	HUES64 Cell Line	embryonic stem cell
21	chr7:69259800-69265200	Weak transcription	Ovary	ovary
22	chr7:69262200-69268400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
23	chr7:69262600-69266800	Weak transcription	Fetal Muscle Leg	muscle
24	chr7:69263000-69264400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr7:69263200-69265200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
26	chr7:69263400-69264400	Weak transcription	Adipose Nuclei	Adipose
27	chr7:69263600-69265000	Weak transcription	HUES48 Cell Line	embryonic stem cell
28	chr7:69264000-69265000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr7:69264000-69265600	Enhancers	GM12878-XiMat	blood
30	chr7:69264200-69264400	Enhancers	Placenta	Placenta
31	chr7:69264200-69264600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr7:69264200-69264600	Enhancers	Primary B cells from peripheral blood	blood
33	chr7:69264200-69265800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
34	chr7:69264200-69265800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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