Variant report

Variant	rs34702834
Chromosome Location	chr14:39463630-39463631
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10133362	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10134654	0.83[EUR][1000 genomes]
rs10137988	0.83[EUR][1000 genomes]
rs10141471	0.82[EUR][1000 genomes]
rs10148623	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12164875	0.81[ASN][1000 genomes]
rs12437031	0.82[EUR][1000 genomes]
rs12437346	0.80[EUR][1000 genomes]
rs12878789	0.81[EUR][1000 genomes]
rs12889064	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12890771	0.83[EUR][1000 genomes]
rs17108728	0.81[EUR][1000 genomes]
rs17677562	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2003740	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34673321	0.81[ASN][1000 genomes]
rs34875314	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35287240	0.80[EUR][1000 genomes]
rs4899137	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4902285	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8018842	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8019028	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs975521	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3429206	chr14:39160730-39648836	Strong transcription Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
2	nsv1038622	chr14:39423562-39604035	Strong transcription Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
3	nsv564417	chr14:39452317-39535560	Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs34702834	TRAPPC6B	cis	multi-tissue	Pritchard

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:39450000-39465000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr14:39455600-39464800	Weak transcription	Psoas Muscle	Psoas
3	chr14:39455800-39465200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr14:39457800-39463800	Weak transcription	Brain Cingulate Gyrus	brain
5	chr14:39458400-39465000	Enhancers	HUVEC	blood vessel
6	chr14:39458800-39463800	Weak transcription	Brain Substantia Nigra	brain
7	chr14:39459000-39463800	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr14:39459000-39464800	Weak transcription	Right Atrium	heart
9	chr14:39459200-39463800	Weak transcription	Brain Anterior Caudate	brain
10	chr14:39459400-39464000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr14:39459600-39463800	Weak transcription	Duodenum Mucosa	Duodenum
12	chr14:39459600-39463800	Weak transcription	Monocytes-CD14+_RO01746	blood
13	chr14:39459600-39464600	Weak transcription	Left Ventricle	heart
14	chr14:39459600-39469000	Weak transcription	Stomach Mucosa	stomach
15	chr14:39459800-39463800	Weak transcription	Primary monocytes fromperipheralblood	blood
16	chr14:39462200-39480400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr14:39462800-39465000	Enhancers	Fetal Lung	lung
18	chr14:39463000-39464600	Weak transcription	Adipose Nuclei	Adipose
19	chr14:39463200-39465200	Enhancers	Fetal Stomach	stomach
20	chr14:39463600-39464800	Enhancers	Brain Hippocampus Middle	brain
21	chr14:39463600-39476000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr14:39463600-39495200	Weak transcription	Muscle Satellite Cultured Cells	--

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